Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 MKNK2P1-201ENST00000437526 628 ntBASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 AC122714.2-201ENST00000502787 707 ntBASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 AC007613.1-201ENST00000572811 2597 ntBASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 AC004706.3-202ENST00000621574 984 ntBASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
LIMD1Q9UGP4 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 AC005082.1-201ENST00000413042 2259 ntBASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 AC010460.3-201ENST00000511359 1579 ntBASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 GPR89P-201ENST00000407924 1495 ntBASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
LIMD1Q9UGP4 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 AL035633.1-201ENST00000406139 838 ntBASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 AC096633.1-201ENST00000422446 749 ntBASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 HCG4B-203ENST00000450128 991 ntBASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 AC108073.2-201ENST00000464002 357 ntBASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 AC073592.5-201ENST00000624854 528 ntBASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMD1Q9UGP4 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMD1Q9UGP4 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMD1Q9UGP4 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LIMD1Q9UGP4 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LIMD1Q9UGP4 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
LIMD1Q9UGP4 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC18.33■□□□□ 0.53
LIMD1Q9UGP4 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMD1Q9UGP4 KRT8P47-201ENST00000604727 1398 ntBASIC18.33■□□□□ 0.53
LIMD1Q9UGP4 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LIMD1Q9UGP4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.33■□□□□ 0.53
LIMD1Q9UGP4 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMD1Q9UGP4 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
LIMD1Q9UGP4 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 AC026471.1-201ENST00000564629 3026 ntBASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMD1Q9UGP4 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms