Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
MKS1Q9NXB0 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.41■□□□□ 0.38
MKS1Q9NXB0 UBALD1-205ENST00000590891 2641 ntBASIC17.41■□□□□ 0.38
MKS1Q9NXB0 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
MKS1Q9NXB0 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC17.41■□□□□ 0.38
MKS1Q9NXB0 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.41■□□□□ 0.38
MKS1Q9NXB0 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC17.41■□□□□ 0.38
MKS1Q9NXB0 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.41■□□□□ 0.38
MKS1Q9NXB0 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 AL391807.1-203ENST00000604392 2365 ntBASIC17.4■□□□□ 0.38
MKS1Q9NXB0 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 KRT8P9-201ENST00000558927 1449 ntBASIC17.4■□□□□ 0.38
MKS1Q9NXB0 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 AL136038.4-201ENST00000603606 1261 ntBASIC17.4■□□□□ 0.38
MKS1Q9NXB0 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 AC079602.3-201ENST00000623931 403 ntBASIC17.4■□□□□ 0.38
MKS1Q9NXB0 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
MKS1Q9NXB0 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
MKS1Q9NXB0 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
MKS1Q9NXB0 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
MKS1Q9NXB0 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.39■□□□□ 0.38
MKS1Q9NXB0 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 BAALC-201ENST00000297574 801 ntTSL 3 BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 GCSHP2-201ENST00000560971 527 ntBASIC17.39■□□□□ 0.37
MKS1Q9NXB0 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.39■□□□□ 0.37
MKS1Q9NXB0 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
MKS1Q9NXB0 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.38■□□□□ 0.37
MKS1Q9NXB0 ECEL1P2-202ENST00000465689 757 ntBASIC17.38■□□□□ 0.37
MKS1Q9NXB0 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms