Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
VMP1Q96GC9 GMCL1P1-201ENST00000463439 1581 ntBASIC16.94■□□□□ 0.3
VMP1Q96GC9 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 AC046158.3-201ENST00000624947 2558 ntBASIC16.93■□□□□ 0.3
VMP1Q96GC9 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
VMP1Q96GC9 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.93■□□□□ 0.3
VMP1Q96GC9 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 CHCHD2P8-201ENST00000429873 447 ntBASIC16.93■□□□□ 0.3
VMP1Q96GC9 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC16.93■□□□□ 0.3
VMP1Q96GC9 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.93■□□□□ 0.3
VMP1Q96GC9 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
VMP1Q96GC9 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.93■□□□□ 0.3
VMP1Q96GC9 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
VMP1Q96GC9 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 AC108860.2-201ENST00000562760 2183 ntBASIC16.93■□□□□ 0.3
VMP1Q96GC9 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
VMP1Q96GC9 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.93■□□□□ 0.3
VMP1Q96GC9 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.93■□□□□ 0.3
VMP1Q96GC9 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC16.93■□□□□ 0.3
VMP1Q96GC9 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
VMP1Q96GC9 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VMP1Q96GC9 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VMP1Q96GC9 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VMP1Q96GC9 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VMP1Q96GC9 AC016734.2-201ENST00000624325 1377 ntBASIC16.92■□□□□ 0.3
VMP1Q96GC9 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VMP1Q96GC9 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VMP1Q96GC9 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 ATP5G2P1-201ENST00000433580 426 ntBASIC16.92■□□□□ 0.3
VMP1Q96GC9 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VMP1Q96GC9 NMU-205ENST00000511469 756 ntTSL 3 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
VMP1Q96GC9 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
VMP1Q96GC9 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
VMP1Q96GC9 AC135776.1-201ENST00000319817 2481 ntBASIC16.92■□□□□ 0.3
VMP1Q96GC9 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
VMP1Q96GC9 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.92■□□□□ 0.3
VMP1Q96GC9 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
VMP1Q96GC9 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 AL353692.3-201ENST00000407031 1396 ntBASIC16.91■□□□□ 0.3
VMP1Q96GC9 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.91■□□□□ 0.3
VMP1Q96GC9 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
VMP1Q96GC9 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
VMP1Q96GC9 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
VMP1Q96GC9 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.91■□□□□ 0.3
VMP1Q96GC9 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.91■□□□□ 0.3
VMP1Q96GC9 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.91■□□□□ 0.3
VMP1Q96GC9 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.91■□□□□ 0.3
VMP1Q96GC9 AC090616.6-201ENST00000582640 721 ntBASIC16.91■□□□□ 0.3
VMP1Q96GC9 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.91■□□□□ 0.3
VMP1Q96GC9 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC16.91■□□□□ 0.3
VMP1Q96GC9 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
VMP1Q96GC9 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms