Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
RTF1Q92541 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
RTF1Q92541 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC22.97■■□□□ 1.27
RTF1Q92541 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC22.97■■□□□ 1.27
RTF1Q92541 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC22.97■■□□□ 1.27
RTF1Q92541 AC098831.1-202ENST00000438821 336 ntBASIC22.97■■□□□ 1.27
RTF1Q92541 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC22.97■■□□□ 1.27
RTF1Q92541 CYB561-217ENST00000582997 877 ntTSL 5 BASIC22.97■■□□□ 1.27
RTF1Q92541 AC006557.2-201ENST00000592985 1240 ntBASIC22.97■■□□□ 1.27
RTF1Q92541 AL671883.3-201ENST00000603274 991 ntBASIC22.97■■□□□ 1.27
RTF1Q92541 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 ZNF259P1-201ENST00000407656 1365 ntBASIC22.97■■□□□ 1.27
RTF1Q92541 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
RTF1Q92541 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC22.97■■□□□ 1.27
RTF1Q92541 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
RTF1Q92541 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC22.96■■□□□ 1.27
RTF1Q92541 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 AC135050.7-201ENST00000624508 2218 ntBASIC22.96■■□□□ 1.27
RTF1Q92541 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
RTF1Q92541 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC22.96■■□□□ 1.27
RTF1Q92541 CENPM-204ENST00000402420 688 ntTSL 5 BASIC22.96■■□□□ 1.27
RTF1Q92541 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC22.96■■□□□ 1.27
RTF1Q92541 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC22.96■■□□□ 1.27
RTF1Q92541 AL589182.2-201ENST00000619332 1049 ntBASIC22.96■■□□□ 1.27
RTF1Q92541 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
RTF1Q92541 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC22.96■■□□□ 1.27
RTF1Q92541 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 AP002414.3-201ENST00000589352 1468 ntBASIC22.96■■□□□ 1.27
RTF1Q92541 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
RTF1Q92541 AL354751.1-201ENST00000412768 1863 ntBASIC22.96■■□□□ 1.27
RTF1Q92541 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC22.96■■□□□ 1.27
RTF1Q92541 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC22.96■■□□□ 1.27
RTF1Q92541 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC22.96■■□□□ 1.27
RTF1Q92541 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC22.96■■□□□ 1.27
RTF1Q92541 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
RTF1Q92541 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC22.96■■□□□ 1.27
RTF1Q92541 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
RTF1Q92541 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
RTF1Q92541 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
RTF1Q92541 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC22.95■■□□□ 1.27
RTF1Q92541 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
RTF1Q92541 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTF1Q92541 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTF1Q92541 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTF1Q92541 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTF1Q92541 MYCLP1-201ENST00000372451 1075 ntBASIC22.95■■□□□ 1.26
RTF1Q92541 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTF1Q92541 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
RTF1Q92541 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC22.95■■□□□ 1.26
RTF1Q92541 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTF1Q92541 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC22.95■■□□□ 1.26
RTF1Q92541 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC22.95■■□□□ 1.26
RTF1Q92541 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC22.95■■□□□ 1.26
RTF1Q92541 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC22.95■■□□□ 1.26
RTF1Q92541 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC22.95■■□□□ 1.26
RTF1Q92541 CD63-204ENST00000546939 779 ntTSL 3 BASIC22.95■■□□□ 1.26
RTF1Q92541 CALM1-205ENST00000553542 877 ntTSL 5 BASIC22.95■■□□□ 1.26
RTF1Q92541 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC22.95■■□□□ 1.26
RTF1Q92541 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
RTF1Q92541 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC22.95■■□□□ 1.26
RTF1Q92541 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC22.95■■□□□ 1.26
RTF1Q92541 CYGB-205ENST00000590175 830 ntTSL 3 BASIC22.95■■□□□ 1.26
RTF1Q92541 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
RTF1Q92541 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC22.95■■□□□ 1.26
RTF1Q92541 PXK-206ENST00000463280 2825 ntTSL 2 BASIC22.95■■□□□ 1.26
RTF1Q92541 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTF1Q92541 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC22.95■■□□□ 1.26
RTF1Q92541 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
RTF1Q92541 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
RTF1Q92541 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms