Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 AC113347.1-201ENST00000413321 391 ntBASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 AC117947.1-201ENST00000427448 529 ntBASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 KRT18P38-201ENST00000449496 1282 ntBASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 AL121761.2-201ENST00000598007 1648 ntBASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
ATG4AQ8WYN0 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 AP003733.1-201ENST00000491725 852 ntBASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 AC060834.1-201ENST00000443027 2032 ntBASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 AL353692.3-201ENST00000407031 1396 ntBASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 BX276092.7-203ENST00000637198 1536 ntBASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
ATG4AQ8WYN0 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 FAM8A6P-201ENST00000407496 1135 ntBASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 AL137013.1-201ENST00000432946 1228 ntBASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 AC012306.2-201ENST00000609350 630 ntBASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 AC106886.4-201ENST00000623557 2502 ntBASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
ATG4AQ8WYN0 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
ATG4AQ8WYN0 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
ATG4AQ8WYN0 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.27■□□□□ 0.51
ATG4AQ8WYN0 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.27■□□□□ 0.51
ATG4AQ8WYN0 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
ATG4AQ8WYN0 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.27■□□□□ 0.51
ATG4AQ8WYN0 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.27■□□□□ 0.51
ATG4AQ8WYN0 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
ATG4AQ8WYN0 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
ATG4AQ8WYN0 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATG4AQ8WYN0 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.26■□□□□ 0.51
ATG4AQ8WYN0 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATG4AQ8WYN0 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC18.26■□□□□ 0.51
ATG4AQ8WYN0 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
ATG4AQ8WYN0 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.26■□□□□ 0.51
ATG4AQ8WYN0 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
ATG4AQ8WYN0 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms