Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 AC004817.3-201ENST00000602957 2129 ntBASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 MED15P5-201ENST00000423150 992 ntBASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 RPS8P6-201ENST00000426177 609 ntBASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 DDX43P3-201ENST00000441064 443 ntBASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 GZMM-202ENST00000592501 941 ntTSL 3 BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 AL355877.3-201ENST00000622820 899 ntBASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 AP000867.4-201ENST00000641616 219 ntBASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-3Q8TAU0 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC20.83■□□□□ 0.92
NKX2-3Q8TAU0 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NKX2-3Q8TAU0 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
NKX2-3Q8TAU0 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.83■□□□□ 0.92
NKX2-3Q8TAU0 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
NKX2-3Q8TAU0 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
NKX2-3Q8TAU0 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
NKX2-3Q8TAU0 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NKX2-3Q8TAU0 AC132938.5-201ENST00000624980 1813 ntBASIC20.83■□□□□ 0.92
NKX2-3Q8TAU0 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.92
NKX2-3Q8TAU0 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
NKX2-3Q8TAU0 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 AC004967.1-201ENST00000453589 447 ntBASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 MIR3197-201ENST00000582241 73 ntBASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-3Q8TAU0 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 AL356488.2-201ENST00000602755 427 ntBASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC20.81■□□□□ 0.92
NKX2-3Q8TAU0 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.8■□□□□ 0.92
NKX2-3Q8TAU0 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms