Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 AC021087.4-201ENST00000563761 564 ntBASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 AC008687.5-201ENST00000593746 558 ntBASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 AL645608.8-201ENST00000606034 2086 ntBASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 AC020916.1-201ENST00000587762 1774 ntBASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
SH3RF1Q7Z6J0 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 DDT-203ENST00000403754 569 ntTSL 3 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 RPS2P1-201ENST00000434010 821 ntBASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 AC012640.2-201ENST00000561606 901 ntBASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 LINC00602-201ENST00000629776 2065 ntBASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
SH3RF1Q7Z6J0 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 YBX2P1-201ENST00000394192 760 ntBASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 EML3-212ENST00000494176 2901 ntTSL 2 BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 EML3-216ENST00000529309 2909 ntTSL 2 BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
SH3RF1Q7Z6J0 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.15■□□□□ 0.82
SH3RF1Q7Z6J0 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms