Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 VPS29-207ENST00000549970 818 ntTSL 3 BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 AC051619.7-201ENST00000568314 623 ntBASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
CCDC88AQ3V6T2 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 AC003669.1-201ENST00000334569 611 ntBASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
CCDC88AQ3V6T2 AC063926.2-201ENST00000623766 1308 ntBASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 AL513480.1-201ENST00000451731 511 ntBASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 DUX4L27-201ENST00000554796 1261 ntBASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 AC008761.3-201ENST00000624803 892 ntBASIC21.39■■□□□ 1.01
CCDC88AQ3V6T2 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 BX276092.7-203ENST00000637198 1536 ntBASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 TIMM8BP1-201ENST00000452384 211 ntBASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 AC074386.1-202ENST00000463561 864 ntBASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 AC069335.1-201ENST00000489972 472 ntBASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 STK19B-204ENST00000512515 211 ntBASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 POLD4-211ENST00000539074 714 ntTSL 3 BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 AC109462.3-201ENST00000573934 613 ntBASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
CCDC88AQ3V6T2 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 ACTG1P4-201ENST00000425123 1122 ntBASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 HLA-V-201ENST00000429037 534 ntBASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 AC015911.4-201ENST00000588022 1070 ntBASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 AC090164.3-201ENST00000610780 2143 ntBASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 KRT8P48-201ENST00000515599 1220 ntBASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC21.37■■□□□ 1.01
CCDC88AQ3V6T2 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
CCDC88AQ3V6T2 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms