Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC12.59□□□□□ -0.39
PRKDCP78527 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC12.59□□□□□ -0.39
PRKDCP78527 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
PRKDCP78527 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 DFFBP1-201ENST00000433250 979 ntBASIC12.59□□□□□ -0.39
PRKDCP78527 AL353779.1-201ENST00000434793 351 ntBASIC12.59□□□□□ -0.39
PRKDCP78527 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
PRKDCP78527 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC12.59□□□□□ -0.39
PRKDCP78527 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC12.59□□□□□ -0.39
PRKDCP78527 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
PRKDCP78527 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC12.59□□□□□ -0.39
PRKDCP78527 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC12.59□□□□□ -0.39
PRKDCP78527 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC12.59□□□□□ -0.39
PRKDCP78527 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 AC098614.1-201ENST00000368528 745 ntBASIC12.59□□□□□ -0.39
PRKDCP78527 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC12.59□□□□□ -0.39
PRKDCP78527 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
PRKDCP78527 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC12.59□□□□□ -0.39
PRKDCP78527 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
PRKDCP78527 RN7SL752P-201ENST00000463779 287 ntBASIC12.59□□□□□ -0.39
PRKDCP78527 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC12.59□□□□□ -0.39
PRKDCP78527 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
PRKDCP78527 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC12.59□□□□□ -0.39
PRKDCP78527 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
PRKDCP78527 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC12.59□□□□□ -0.39
PRKDCP78527 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC12.59□□□□□ -0.39
PRKDCP78527 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC12.59□□□□□ -0.39
PRKDCP78527 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC12.59□□□□□ -0.39
PRKDCP78527 MIR6869-201ENST00000619434 62 ntBASIC12.59□□□□□ -0.39
PRKDCP78527 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC12.59□□□□□ -0.39
PRKDCP78527 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
PRKDCP78527 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
PRKDCP78527 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC12.58□□□□□ -0.39
PRKDCP78527 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC12.58□□□□□ -0.39
PRKDCP78527 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC12.58□□□□□ -0.4
PRKDCP78527 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC12.58□□□□□ -0.4
PRKDCP78527 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC12.58□□□□□ -0.4
PRKDCP78527 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC12.58□□□□□ -0.4
PRKDCP78527 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC12.58□□□□□ -0.4
PRKDCP78527 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC12.58□□□□□ -0.4
PRKDCP78527 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 AKAP8P1-201ENST00000434743 1349 ntBASIC12.58□□□□□ -0.4
PRKDCP78527 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC12.58□□□□□ -0.4
PRKDCP78527 PPA1-206ENST00000625364 644 ntTSL 5 BASIC12.58□□□□□ -0.4
PRKDCP78527 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 KRT8P44-201ENST00000441609 1350 ntBASIC12.58□□□□□ -0.4
PRKDCP78527 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC12.58□□□□□ -0.4
PRKDCP78527 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC12.58□□□□□ -0.4
PRKDCP78527 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC12.58□□□□□ -0.4
PRKDCP78527 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 AC004840.1-201ENST00000636359 365 ntBASIC12.58□□□□□ -0.4
PRKDCP78527 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
PRKDCP78527 POLI-202ENST00000406285 2030 ntTSL 2 BASIC12.57□□□□□ -0.4
PRKDCP78527 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PRKDCP78527 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC12.57□□□□□ -0.4
PRKDCP78527 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
PRKDCP78527 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC12.57□□□□□ -0.4
PRKDCP78527 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
PRKDCP78527 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
PRKDCP78527 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PRKDCP78527 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC12.57□□□□□ -0.4
PRKDCP78527 AL032819.2-201ENST00000624543 2162 ntBASIC12.57□□□□□ -0.4
PRKDCP78527 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PRKDCP78527 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC12.57□□□□□ -0.4
PRKDCP78527 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PRKDCP78527 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
PRKDCP78527 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
PRKDCP78527 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC12.57□□□□□ -0.4
PRKDCP78527 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC12.57□□□□□ -0.4
PRKDCP78527 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC12.57□□□□□ -0.4
PRKDCP78527 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms