Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
ABCA4P78363 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
ABCA4P78363 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
ABCA4P78363 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC15.13■□□□□ 0.01
ABCA4P78363 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 ATP6V0CP3-201ENST00000417255 467 ntBASIC15.13■□□□□ 0.01
ABCA4P78363 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.13■□□□□ 0.01
ABCA4P78363 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC15.13■□□□□ 0.01
ABCA4P78363 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 AC135776.1-201ENST00000319817 2481 ntBASIC15.13■□□□□ 0.01
ABCA4P78363 USP49-202ENST00000373010 2446 ntTSL 5 BASIC15.13■□□□□ 0.01
ABCA4P78363 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
ABCA4P78363 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC15.13■□□□□ 0.01
ABCA4P78363 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.13■□□□□ 0.01
ABCA4P78363 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.13■□□□□ 0.01
ABCA4P78363 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.13■□□□□ 0.01
ABCA4P78363 AC106028.4-201ENST00000614509 607 ntBASIC15.13■□□□□ 0.01
ABCA4P78363 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
ABCA4P78363 AL031598.1-201ENST00000561511 1773 ntBASIC15.12■□□□□ 0.01
ABCA4P78363 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA4P78363 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA4P78363 AC009949.1-201ENST00000623048 1830 ntBASIC15.12■□□□□ 0.01
ABCA4P78363 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA4P78363 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
ABCA4P78363 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.12■□□□□ 0.01
ABCA4P78363 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.12■□□□□ 0.01
ABCA4P78363 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA4P78363 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.12■□□□□ 0.01
ABCA4P78363 GREM1-201ENST00000560677 623 ntTSL 4 BASIC15.12■□□□□ 0.01
ABCA4P78363 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.12■□□□□ 0.01
ABCA4P78363 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA4P78363 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
ABCA4P78363 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA4P78363 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA4P78363 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA4P78363 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA4P78363 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC15.12■□□□□ 0.01
ABCA4P78363 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA4P78363 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA4P78363 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
ABCA4P78363 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA4P78363 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA4P78363 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
ABCA4P78363 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC15.12■□□□□ 0.01
ABCA4P78363 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.12■□□□□ 0.01
ABCA4P78363 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC15.12■□□□□ 0.01
ABCA4P78363 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.12■□□□□ 0.01
ABCA4P78363 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
ABCA4P78363 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC15.12■□□□□ 0.01
ABCA4P78363 AC010654.1-201ENST00000615722 808 ntBASIC15.12■□□□□ 0.01
ABCA4P78363 AD001527.2-201ENST00000622994 785 ntBASIC15.12■□□□□ 0.01
ABCA4P78363 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
ABCA4P78363 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
ABCA4P78363 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 GID4-202ENST00000376345 1391 ntTSL 3 BASIC15.11■□□□□ 0.01
ABCA4P78363 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
ABCA4P78363 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC15.11■□□□□ 0.01
ABCA4P78363 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.11■□□□□ 0.01
ABCA4P78363 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
ABCA4P78363 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 WBP2-203ENST00000433525 928 ntTSL 2 BASIC15.11■□□□□ 0.01
ABCA4P78363 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC15.11■□□□□ 0.01
ABCA4P78363 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.11■□□□□ 0.01
ABCA4P78363 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC15.11■□□□□ 0.01
ABCA4P78363 AC093512.1-201ENST00000617969 520 ntBASIC15.11■□□□□ 0.01
ABCA4P78363 AL589182.2-201ENST00000619332 1049 ntBASIC15.11■□□□□ 0.01
ABCA4P78363 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
ABCA4P78363 WIZP1-201ENST00000531444 2299 ntBASIC15.11■□□□□ 0.01
ABCA4P78363 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC15.11■□□□□ 0.01
ABCA4P78363 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
ABCA4P78363 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC15.11■□□□□ 0.01
ABCA4P78363 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms