Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 TK1-204ENST00000590430 683 ntTSL 3 BASIC21.78■■□□□ 1.08
NUP98P52948 ORC5-208ENST00000626700 344 ntTSL 3 BASIC21.78■■□□□ 1.08
NUP98P52948 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
NUP98P52948 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NUP98P52948 REM2-202ENST00000536884 1331 ntTSL 2 BASIC21.78■■□□□ 1.08
NUP98P52948 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
NUP98P52948 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC21.78■■□□□ 1.08
NUP98P52948 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
NUP98P52948 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC21.78■■□□□ 1.08
NUP98P52948 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NUP98P52948 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
NUP98P52948 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
NUP98P52948 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
NUP98P52948 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
NUP98P52948 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.78■■□□□ 1.08
NUP98P52948 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC21.78■■□□□ 1.08
NUP98P52948 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
NUP98P52948 CYMP-203ENST00000474680 1263 ntBASIC21.78■■□□□ 1.08
NUP98P52948 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.78■■□□□ 1.08
NUP98P52948 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC21.78■■□□□ 1.08
NUP98P52948 RPS15-207ENST00000591032 550 ntTSL 3 BASIC21.78■■□□□ 1.08
NUP98P52948 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC21.78■■□□□ 1.08
NUP98P52948 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
NUP98P52948 AC099522.2-201ENST00000607001 744 ntBASIC21.78■■□□□ 1.08
NUP98P52948 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
NUP98P52948 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NUP98P52948 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NUP98P52948 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.77■■□□□ 1.08
NUP98P52948 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC21.77■■□□□ 1.08
NUP98P52948 AC092919.2-201ENST00000623631 1645 ntBASIC21.77■■□□□ 1.08
NUP98P52948 AC025580.3-201ENST00000617932 1424 ntBASIC21.77■■□□□ 1.08
NUP98P52948 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NUP98P52948 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
NUP98P52948 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NUP98P52948 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.77■■□□□ 1.08
NUP98P52948 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
NUP98P52948 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NUP98P52948 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NUP98P52948 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC21.77■■□□□ 1.08
NUP98P52948 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC21.77■■□□□ 1.08
NUP98P52948 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC21.77■■□□□ 1.08
NUP98P52948 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC21.77■■□□□ 1.08
NUP98P52948 AC107918.2-201ENST00000530817 355 ntBASIC21.77■■□□□ 1.08
NUP98P52948 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
NUP98P52948 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
NUP98P52948 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
NUP98P52948 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
NUP98P52948 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
NUP98P52948 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
NUP98P52948 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
NUP98P52948 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC21.76■■□□□ 1.07
NUP98P52948 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NUP98P52948 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
NUP98P52948 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NUP98P52948 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC21.76■■□□□ 1.07
NUP98P52948 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NUP98P52948 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
NUP98P52948 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
NUP98P52948 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
NUP98P52948 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NUP98P52948 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC21.76■■□□□ 1.07
NUP98P52948 AC022145.2-201ENST00000598203 171 ntBASIC21.76■■□□□ 1.07
NUP98P52948 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
NUP98P52948 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
NUP98P52948 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC21.76■■□□□ 1.07
NUP98P52948 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC21.76■■□□□ 1.07
NUP98P52948 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
NUP98P52948 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
NUP98P52948 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.75■■□□□ 1.07
NUP98P52948 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NUP98P52948 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NUP98P52948 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC21.75■■□□□ 1.07
NUP98P52948 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC21.75■■□□□ 1.07
NUP98P52948 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
NUP98P52948 THTPA-204ENST00000554970 569 ntTSL 4 BASIC21.75■■□□□ 1.07
NUP98P52948 THTPA-206ENST00000556015 535 ntTSL 3 BASIC21.75■■□□□ 1.07
NUP98P52948 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.75■■□□□ 1.07
NUP98P52948 ACTL9-202ENST00000612068 1252 ntBASIC21.75■■□□□ 1.07
NUP98P52948 AC104581.1-202ENST00000635932 2618 ntBASIC21.75■■□□□ 1.07
NUP98P52948 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NUP98P52948 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
NUP98P52948 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC21.75■■□□□ 1.07
NUP98P52948 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
NUP98P52948 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC21.74■■□□□ 1.07
NUP98P52948 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NUP98P52948 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NUP98P52948 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.74■■□□□ 1.07
NUP98P52948 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NUP98P52948 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NUP98P52948 AL139400.1-201ENST00000366220 510 ntBASIC21.74■■□□□ 1.07
NUP98P52948 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NUP98P52948 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NUP98P52948 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC21.74■■□□□ 1.07
NUP98P52948 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NUP98P52948 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
NUP98P52948 PODN-203ENST00000395871 2744 ntTSL 5 BASIC21.74■■□□□ 1.07
NUP98P52948 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
NUP98P52948 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
NUP98P52948 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms