Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CTCFP49711 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.34■□□□□ 0.85
CTCFP49711 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTCFP49711 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC20.34■□□□□ 0.85
CTCFP49711 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CTCFP49711 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CTCFP49711 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
CTCFP49711 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
CTCFP49711 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
CTCFP49711 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC20.33■□□□□ 0.85
CTCFP49711 AL133338.1-201ENST00000565695 1517 ntBASIC20.33■□□□□ 0.85
CTCFP49711 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC20.33■□□□□ 0.85
CTCFP49711 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 AC122714.2-201ENST00000502787 707 ntBASIC20.33■□□□□ 0.85
CTCFP49711 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.33■□□□□ 0.85
CTCFP49711 FAM86C2P-203ENST00000528684 1004 ntBASIC20.33■□□□□ 0.85
CTCFP49711 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CTCFP49711 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
CTCFP49711 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
CTCFP49711 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC20.33■□□□□ 0.84
CTCFP49711 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC20.33■□□□□ 0.84
CTCFP49711 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.33■□□□□ 0.84
CTCFP49711 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CTCFP49711 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
CTCFP49711 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC20.33■□□□□ 0.84
CTCFP49711 TDG-209ENST00000544861 1387 ntTSL 2 BASIC20.33■□□□□ 0.84
CTCFP49711 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTCFP49711 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTCFP49711 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.32■□□□□ 0.84
CTCFP49711 AC098818.2-201ENST00000564925 2320 ntBASIC20.32■□□□□ 0.84
CTCFP49711 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
CTCFP49711 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTCFP49711 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTCFP49711 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC20.32■□□□□ 0.84
CTCFP49711 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
CTCFP49711 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
CTCFP49711 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.32■□□□□ 0.84
CTCFP49711 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTCFP49711 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTCFP49711 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
CTCFP49711 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.32■□□□□ 0.84
CTCFP49711 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.32■□□□□ 0.84
CTCFP49711 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC20.32■□□□□ 0.84
CTCFP49711 AL592309.1-201ENST00000443127 649 ntBASIC20.32■□□□□ 0.84
CTCFP49711 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC20.32■□□□□ 0.84
CTCFP49711 SPDYE11-202ENST00000450699 704 ntBASIC20.32■□□□□ 0.84
CTCFP49711 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC20.32■□□□□ 0.84
CTCFP49711 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC20.32■□□□□ 0.84
CTCFP49711 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC20.32■□□□□ 0.84
CTCFP49711 SPDYE9P-201ENST00000570642 692 ntBASIC20.32■□□□□ 0.84
CTCFP49711 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.32■□□□□ 0.84
CTCFP49711 SPDYE10P-202ENST00000612005 668 ntBASIC20.32■□□□□ 0.84
CTCFP49711 SPDYE8P-202ENST00000612377 668 ntBASIC20.32■□□□□ 0.84
CTCFP49711 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTCFP49711 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTCFP49711 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CTCFP49711 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.32■□□□□ 0.84
CTCFP49711 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
CTCFP49711 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
CTCFP49711 BX323043.1-201ENST00000641006 1765 ntBASIC20.31■□□□□ 0.84
CTCFP49711 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTCFP49711 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTCFP49711 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTCFP49711 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
CTCFP49711 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTCFP49711 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTCFP49711 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.31■□□□□ 0.84
CTCFP49711 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTCFP49711 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTCFP49711 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTCFP49711 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTCFP49711 PTPA-220ENST00000436883 532 ntTSL 4 BASIC20.31■□□□□ 0.84
CTCFP49711 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
CTCFP49711 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC20.31■□□□□ 0.84
CTCFP49711 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTCFP49711 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC20.31■□□□□ 0.84
CTCFP49711 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC20.31■□□□□ 0.84
CTCFP49711 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.31■□□□□ 0.84
CTCFP49711 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
CTCFP49711 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.31■□□□□ 0.84
CTCFP49711 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
CTCFP49711 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
CTCFP49711 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.3■□□□□ 0.84
CTCFP49711 FEM1AP3-201ENST00000403722 1741 ntBASIC20.3■□□□□ 0.84
CTCFP49711 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms