Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.66■□□□□ 0.58
LHX1P48742 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX1P48742 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX1P48742 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX1P48742 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX1P48742 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC18.66■□□□□ 0.58
LHX1P48742 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX1P48742 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX1P48742 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LHX1P48742 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
LHX1P48742 RPS2P1-201ENST00000434010 821 ntBASIC18.66■□□□□ 0.58
LHX1P48742 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.66■□□□□ 0.58
LHX1P48742 AC079776.4-201ENST00000511039 504 ntBASIC18.66■□□□□ 0.58
LHX1P48742 OR7E14P-202ENST00000530490 1290 ntBASIC18.66■□□□□ 0.58
LHX1P48742 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC18.66■□□□□ 0.58
LHX1P48742 FAM215A-202ENST00000632077 792 ntBASIC18.66■□□□□ 0.58
LHX1P48742 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX1P48742 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LHX1P48742 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.66■□□□□ 0.58
LHX1P48742 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LHX1P48742 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC18.66■□□□□ 0.58
LHX1P48742 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
LHX1P48742 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
LHX1P48742 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
LHX1P48742 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.65■□□□□ 0.58
LHX1P48742 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
LHX1P48742 AC009336.1-201ENST00000608941 1553 ntBASIC18.65■□□□□ 0.58
LHX1P48742 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
LHX1P48742 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
LHX1P48742 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.65■□□□□ 0.58
LHX1P48742 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC18.65■□□□□ 0.58
LHX1P48742 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC18.65■□□□□ 0.58
LHX1P48742 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC18.65■□□□□ 0.58
LHX1P48742 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.65■□□□□ 0.58
LHX1P48742 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.65■□□□□ 0.58
LHX1P48742 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
LHX1P48742 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.65■□□□□ 0.58
LHX1P48742 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
LHX1P48742 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.65■□□□□ 0.58
LHX1P48742 PRKN-208ENST00000610470 531 ntTSL 2 BASIC18.65■□□□□ 0.58
LHX1P48742 PRKN-209ENST00000612485 225 ntTSL 5 BASIC18.65■□□□□ 0.58
LHX1P48742 AC107918.4-202ENST00000641623 219 ntBASIC18.65■□□□□ 0.58
LHX1P48742 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LHX1P48742 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LHX1P48742 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LHX1P48742 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.58
LHX1P48742 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LHX1P48742 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC18.64■□□□□ 0.57
LHX1P48742 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LHX1P48742 AC004817.3-201ENST00000602957 2129 ntBASIC18.64■□□□□ 0.57
LHX1P48742 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LHX1P48742 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LHX1P48742 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC18.64■□□□□ 0.57
LHX1P48742 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LHX1P48742 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LHX1P48742 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
LHX1P48742 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LHX1P48742 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LHX1P48742 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.64■□□□□ 0.57
LHX1P48742 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
LHX1P48742 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.64■□□□□ 0.57
LHX1P48742 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC18.64■□□□□ 0.57
LHX1P48742 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.64■□□□□ 0.57
LHX1P48742 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LHX1P48742 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LHX1P48742 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LHX1P48742 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
LHX1P48742 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX1P48742 AC012317.2-201ENST00000623305 2251 ntBASIC18.63■□□□□ 0.57
LHX1P48742 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX1P48742 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LHX1P48742 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC18.63■□□□□ 0.57
LHX1P48742 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX1P48742 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC18.63■□□□□ 0.57
LHX1P48742 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
LHX1P48742 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX1P48742 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX1P48742 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LHX1P48742 HTR7P1-202ENST00000624664 4411 ntBASIC18.63■□□□□ 0.57
LHX1P48742 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC18.63■□□□□ 0.57
LHX1P48742 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LHX1P48742 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LHX1P48742 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX1P48742 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.63■□□□□ 0.57
LHX1P48742 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LHX1P48742 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms