Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 PCDHB17P-201ENST00000539533 2393 ntBASIC17.76■□□□□ 0.43
VIMP08670 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.76■□□□□ 0.43
VIMP08670 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
VIMP08670 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
VIMP08670 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.76■□□□□ 0.43
VIMP08670 LINC00554-201ENST00000564841 3011 ntBASIC17.76■□□□□ 0.43
VIMP08670 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 AC068418.2-201ENST00000577309 3703 ntBASIC17.76■□□□□ 0.43
VIMP08670 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.76■□□□□ 0.43
VIMP08670 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
VIMP08670 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.76■□□□□ 0.43
VIMP08670 NCF1B-203ENST00000435988 1254 ntBASIC17.76■□□□□ 0.43
VIMP08670 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.76■□□□□ 0.43
VIMP08670 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.76■□□□□ 0.43
VIMP08670 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.76■□□□□ 0.43
VIMP08670 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC17.76■□□□□ 0.43
VIMP08670 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.76■□□□□ 0.43
VIMP08670 AC083880.1-201ENST00000608266 535 ntBASIC17.76■□□□□ 0.43
VIMP08670 AC011298.2-201ENST00000617989 482 ntBASIC17.76■□□□□ 0.43
VIMP08670 LINC01451-201ENST00000623792 534 ntBASIC17.76■□□□□ 0.43
VIMP08670 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.76■□□□□ 0.43
VIMP08670 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
VIMP08670 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
VIMP08670 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
VIMP08670 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.76■□□□□ 0.43
VIMP08670 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
VIMP08670 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
VIMP08670 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC17.76■□□□□ 0.43
VIMP08670 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
VIMP08670 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC17.76■□□□□ 0.43
VIMP08670 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
VIMP08670 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
VIMP08670 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VIMP08670 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC17.75■□□□□ 0.43
VIMP08670 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VIMP08670 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VIMP08670 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.75■□□□□ 0.43
VIMP08670 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VIMP08670 TSPY6P-201ENST00000448518 926 ntBASIC17.75■□□□□ 0.43
VIMP08670 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.75■□□□□ 0.43
VIMP08670 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
VIMP08670 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.75■□□□□ 0.43
VIMP08670 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC17.75■□□□□ 0.43
VIMP08670 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.75■□□□□ 0.43
VIMP08670 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC17.75■□□□□ 0.43
VIMP08670 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
VIMP08670 GCK-209ENST00000616242 2260 ntTSL 5 BASIC17.75■□□□□ 0.43
VIMP08670 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
VIMP08670 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.75■□□□□ 0.43
VIMP08670 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.75■□□□□ 0.43
VIMP08670 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC17.75■□□□□ 0.43
VIMP08670 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC17.75■□□□□ 0.43
VIMP08670 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
VIMP08670 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
VIMP08670 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VIMP08670 AC036111.1-201ENST00000533973 1582 ntBASIC17.74■□□□□ 0.43
VIMP08670 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
VIMP08670 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.74■□□□□ 0.43
VIMP08670 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC17.74■□□□□ 0.43
VIMP08670 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.74■□□□□ 0.43
VIMP08670 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.74■□□□□ 0.43
VIMP08670 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
VIMP08670 KRT16P5-201ENST00000455284 522 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms