Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC14.18□□□□□ -0.14
HOXA3O43365 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
HOXA3O43365 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA3O43365 AL591424.1-201ENST00000442569 1213 ntBASIC14.18□□□□□ -0.14
HOXA3O43365 NKTR-203ENST00000442970 646 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA3O43365 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXA3O43365 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA3O43365 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA3O43365 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC14.18□□□□□ -0.14
HOXA3O43365 RPS29-206ENST00000557111 488 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA3O43365 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXA3O43365 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXA3O43365 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
HOXA3O43365 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXA3O43365 FAM197Y3-203ENST00000618346 717 ntBASIC14.18□□□□□ -0.14
HOXA3O43365 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC14.18□□□□□ -0.14
HOXA3O43365 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC14.18□□□□□ -0.14
HOXA3O43365 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
HOXA3O43365 AC004817.3-201ENST00000602957 2129 ntBASIC14.18□□□□□ -0.14
HOXA3O43365 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC14.18□□□□□ -0.14
HOXA3O43365 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
HOXA3O43365 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HOXA3O43365 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXA3O43365 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
HOXA3O43365 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 SP100-208ENST00000427101 1922 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXA3O43365 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
HOXA3O43365 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
HOXA3O43365 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
HOXA3O43365 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC14.17□□□□□ -0.14
HOXA3O43365 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXA3O43365 AC103564.2-201ENST00000432853 1299 ntBASIC14.17□□□□□ -0.14
HOXA3O43365 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.17□□□□□ -0.14
HOXA3O43365 UNC93B6-202ENST00000528242 690 ntBASIC14.17□□□□□ -0.14
HOXA3O43365 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXA3O43365 SDCCAG3P1-201ENST00000589292 1150 ntBASIC14.17□□□□□ -0.14
HOXA3O43365 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
HOXA3O43365 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.17□□□□□ -0.14
HOXA3O43365 MIR1199-201ENST00000621445 119 ntBASIC14.17□□□□□ -0.14
HOXA3O43365 AD001527.2-201ENST00000622994 785 ntBASIC14.17□□□□□ -0.14
HOXA3O43365 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXA3O43365 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC14.17□□□□□ -0.14
HOXA3O43365 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
HOXA3O43365 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC14.17□□□□□ -0.14
HOXA3O43365 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXA3O43365 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA3O43365 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXA3O43365 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA3O43365 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXA3O43365 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
HOXA3O43365 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
HOXA3O43365 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA3O43365 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
HOXA3O43365 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
HOXA3O43365 ADM-208ENST00000534464 1640 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXA3O43365 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA3O43365 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA3O43365 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA3O43365 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC14.16□□□□□ -0.14
HOXA3O43365 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
HOXA3O43365 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
HOXA3O43365 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC14.16□□□□□ -0.14
HOXA3O43365 LBH-204ENST00000406087 559 ntTSL 4 BASIC14.16□□□□□ -0.14
HOXA3O43365 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC14.16□□□□□ -0.14
HOXA3O43365 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.16□□□□□ -0.14
HOXA3O43365 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC14.16□□□□□ -0.14
HOXA3O43365 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
HOXA3O43365 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms