Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.34■□□□□ 0.53
AP4E1Q9UPM8 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.33■□□□□ 0.53
AP4E1Q9UPM8 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
AP4E1Q9UPM8 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.33■□□□□ 0.53
AP4E1Q9UPM8 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC18.33■□□□□ 0.53
AP4E1Q9UPM8 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
AP4E1Q9UPM8 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
AP4E1Q9UPM8 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC18.33■□□□□ 0.53
AP4E1Q9UPM8 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 AC092119.3-201ENST00000612618 583 ntBASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 AL138688.1-201ENST00000624851 1594 ntBASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
AP4E1Q9UPM8 HARS-201ENST00000307633 1780 ntTSL 2 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 DKK3-201ENST00000326932 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 KRT17P6-201ENST00000453795 1220 ntBASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 AC009533.2-201ENST00000543664 586 ntBASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
AP4E1Q9UPM8 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
AP4E1Q9UPM8 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms