Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 UPK3BP1-201ENST00000428678 509 ntBASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 MTCL1P1-201ENST00000446207 792 ntBASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 AC063952.2-201ENST00000498792 1227 ntBASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC21.09■□□□□ 0.97
UPF3BQ9BZI7 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 LINC01451-201ENST00000623792 534 ntBASIC21.08■□□□□ 0.97
UPF3BQ9BZI7 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
UPF3BQ9BZI7 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
UPF3BQ9BZI7 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
UPF3BQ9BZI7 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
UPF3BQ9BZI7 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
UPF3BQ9BZI7 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
UPF3BQ9BZI7 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
UPF3BQ9BZI7 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 UBC-206ENST00000538617 1303 ntTSL 5 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 DDT-203ENST00000403754 569 ntTSL 3 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 DDT-206ENST00000430101 573 ntTSL 2 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 LTBR-211ENST00000543190 785 ntTSL 3 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC21.07■□□□□ 0.96
UPF3BQ9BZI7 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 AC022616.7-201ENST00000525383 220 ntBASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC21.06■□□□□ 0.96
UPF3BQ9BZI7 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms