Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.35■□□□□ 0.69
TRAIPQ9BWF2 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 COX5BP2-201ENST00000392354 334 ntBASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 NKAPP1-205ENST00000585790 367 ntBASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC19.34■□□□□ 0.69
TRAIPQ9BWF2 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 SP100-208ENST00000427101 1922 ntTSL 2 BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 CD276-201ENST00000318424 2738 ntTSL 5 BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
TRAIPQ9BWF2 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 AC103564.2-201ENST00000432853 1299 ntBASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 IGHV3-22-201ENST00000520721 359 ntBASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 CD63-204ENST00000546939 779 ntTSL 3 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 AC145285.3-201ENST00000564603 959 ntBASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 AC079776.2-201ENST00000641154 1609 ntBASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
TRAIPQ9BWF2 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.32■□□□□ 0.68
TRAIPQ9BWF2 PRYP5-201ENST00000451909 266 ntBASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms