Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC13.27□□□□□ -0.29
LINC00477Q96M19 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
LINC00477Q96M19 AC016396.2-201ENST00000562575 1417 ntBASIC13.27□□□□□ -0.29
LINC00477Q96M19 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 BX276092.7-203ENST00000637198 1536 ntBASIC13.27□□□□□ -0.29
LINC00477Q96M19 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 AL121761.2-201ENST00000598007 1648 ntBASIC13.27□□□□□ -0.29
LINC00477Q96M19 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
LINC00477Q96M19 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
LINC00477Q96M19 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
LINC00477Q96M19 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
LINC00477Q96M19 CROCCP2-202ENST00000412962 2773 ntBASIC13.26□□□□□ -0.29
LINC00477Q96M19 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 DDT-203ENST00000403754 569 ntTSL 3 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 FAM8A6P-201ENST00000407496 1135 ntBASIC13.26□□□□□ -0.29
LINC00477Q96M19 TSPY12P-201ENST00000421279 868 ntBASIC13.26□□□□□ -0.29
LINC00477Q96M19 AL079301.1-201ENST00000424580 1633 ntTSL 2 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 LIN28AP1-201ENST00000429574 405 ntBASIC13.26□□□□□ -0.29
LINC00477Q96M19 DDT-206ENST00000430101 573 ntTSL 2 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 RASA4DP-201ENST00000460726 1199 ntBASIC13.26□□□□□ -0.29
LINC00477Q96M19 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
LINC00477Q96M19 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC13.26□□□□□ -0.29
LINC00477Q96M19 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 AL391807.1-203ENST00000604392 2365 ntBASIC13.25□□□□□ -0.29
LINC00477Q96M19 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 AP001094.4-201ENST00000579008 2176 ntBASIC13.25□□□□□ -0.29
LINC00477Q96M19 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 REXO1L11P-201ENST00000620964 1927 ntBASIC13.25□□□□□ -0.29
LINC00477Q96M19 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 RPL3-201ENST00000216146 1442 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
LINC00477Q96M19 AL136038.4-201ENST00000603606 1261 ntBASIC13.25□□□□□ -0.29
LINC00477Q96M19 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC13.25□□□□□ -0.29
LINC00477Q96M19 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms