Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC20.06■□□□□ 0.8
ERCC4Q92889 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.06■□□□□ 0.8
ERCC4Q92889 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
ERCC4Q92889 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC4Q92889 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
ERCC4Q92889 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC4Q92889 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC4Q92889 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC4Q92889 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
ERCC4Q92889 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC4Q92889 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
ERCC4Q92889 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC20.05■□□□□ 0.8
ERCC4Q92889 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC4Q92889 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC20.05■□□□□ 0.8
ERCC4Q92889 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
ERCC4Q92889 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.05■□□□□ 0.8
ERCC4Q92889 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.05■□□□□ 0.8
ERCC4Q92889 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC20.05■□□□□ 0.8
ERCC4Q92889 AL138966.2-201ENST00000621997 464 ntBASIC20.05■□□□□ 0.8
ERCC4Q92889 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC20.05■□□□□ 0.8
ERCC4Q92889 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC4Q92889 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC4Q92889 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC20.05■□□□□ 0.8
ERCC4Q92889 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
ERCC4Q92889 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
ERCC4Q92889 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC4Q92889 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC4Q92889 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC4Q92889 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
ERCC4Q92889 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC20.05■□□□□ 0.8
ERCC4Q92889 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
ERCC4Q92889 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC20.04■□□□□ 0.8
ERCC4Q92889 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.04■□□□□ 0.8
ERCC4Q92889 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
ERCC4Q92889 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC20.04■□□□□ 0.8
ERCC4Q92889 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.04■□□□□ 0.8
ERCC4Q92889 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
ERCC4Q92889 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC20.04■□□□□ 0.8
ERCC4Q92889 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.04■□□□□ 0.8
ERCC4Q92889 CD81-212ENST00000526072 1172 ntTSL 5 BASIC20.04■□□□□ 0.8
ERCC4Q92889 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.04■□□□□ 0.8
ERCC4Q92889 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.04■□□□□ 0.8
ERCC4Q92889 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 HLA-J-201ENST00000462773 1622 ntBASIC20.04■□□□□ 0.8
ERCC4Q92889 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
ERCC4Q92889 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.04■□□□□ 0.8
ERCC4Q92889 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ERCC4Q92889 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC20.03■□□□□ 0.8
ERCC4Q92889 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
ERCC4Q92889 AC022898.2-201ENST00000616822 1312 ntBASIC20.03■□□□□ 0.8
ERCC4Q92889 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 HES2-202ENST00000377836 507 ntTSL 2 BASIC20.03■□□□□ 0.8
ERCC4Q92889 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC20.03■□□□□ 0.8
ERCC4Q92889 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC20.03■□□□□ 0.8
ERCC4Q92889 AC010203.1-204ENST00000548782 407 ntBASIC20.03■□□□□ 0.8
ERCC4Q92889 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC20.03■□□□□ 0.8
ERCC4Q92889 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC20.03■□□□□ 0.8
ERCC4Q92889 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20.03■□□□□ 0.8
ERCC4Q92889 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 TNRC18P3-201ENST00000441896 2691 ntBASIC20.03■□□□□ 0.8
ERCC4Q92889 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.03■□□□□ 0.8
ERCC4Q92889 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ERCC4Q92889 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.02■□□□□ 0.8
ERCC4Q92889 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
ERCC4Q92889 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC20.02■□□□□ 0.8
ERCC4Q92889 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ERCC4Q92889 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms