Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1AQ8TE12 AL020996.1-203ENST00000536896 2307 ntBASIC17.16■□□□□ 0.34
LMX1AQ8TE12 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 AC006504.4-201ENST00000592118 1568 ntBASIC17.16■□□□□ 0.34
LMX1AQ8TE12 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 NCF1C-201ENST00000438382 1427 ntBASIC17.16■□□□□ 0.34
LMX1AQ8TE12 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 AP000997.3-201ENST00000623333 2250 ntBASIC17.16■□□□□ 0.34
LMX1AQ8TE12 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 DDX43P3-201ENST00000441064 443 ntBASIC17.16■□□□□ 0.34
LMX1AQ8TE12 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 STK19B-204ENST00000512515 211 ntBASIC17.16■□□□□ 0.34
LMX1AQ8TE12 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 AL691403.2-201ENST00000618460 490 ntBASIC17.16■□□□□ 0.34
LMX1AQ8TE12 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.16■□□□□ 0.34
LMX1AQ8TE12 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 YBX2P1-201ENST00000394192 760 ntBASIC17.15■□□□□ 0.34
LMX1AQ8TE12 AC023274.1-201ENST00000418278 595 ntBASIC17.15■□□□□ 0.34
LMX1AQ8TE12 UPF3AP3-201ENST00000420996 769 ntBASIC17.15■□□□□ 0.34
LMX1AQ8TE12 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 MIR3687-2-201ENST00000577708 61 ntBASIC17.15■□□□□ 0.34
LMX1AQ8TE12 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 AC064836.3-201ENST00000607928 673 ntBASIC17.15■□□□□ 0.34
LMX1AQ8TE12 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 MIR3687-1-201ENST00000614492 61 ntBASIC17.15■□□□□ 0.34
LMX1AQ8TE12 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 AC087289.5-201ENST00000586076 3175 ntBASIC17.15■□□□□ 0.34
LMX1AQ8TE12 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.15■□□□□ 0.34
LMX1AQ8TE12 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.15■□□□□ 0.34
LMX1AQ8TE12 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.14■□□□□ 0.34
LMX1AQ8TE12 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
LMX1AQ8TE12 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms