Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PMS2P1-201ENST00000431037 1228 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AP005117.1-201ENST00000584346 1413 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 HES2-202ENST00000377836 507 ntTSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 SNAI3-AS1-205ENST00000568633 2096 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AL161938.1-201ENST00000569833 2180 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 SAPCD2P3-201ENST00000455031 850 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AC104390.1-201ENST00000555663 520 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 ABBA01031661.1-201ENST00000634362 1253 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 UROS-202ENST00000368778 1556 ntTSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 DANCR-204ENST00000444958 709 ntTSL 3 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 TPM1-218ENST00000559281 851 ntTSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AC009065.1-201ENST00000564055 1225 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AC116407.3-201ENST00000623905 1129 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AC104109.2-201ENST00000602919 1418 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 GCC1-201ENST00000321407 4149 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 GUSBP12-201ENST00000513727 720 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 TERC-201ENST00000602385 541 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AC027601.4-201ENST00000611259 610 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 ACE-204ENST00000428043 5120 ntTSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
SYNE1Q8NF91 LTB4R2-202ENST00000528054 3092 ntBASIC5.46□□□□□ -1.53
SYNE1Q8NF91 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.53
SYNE1Q8NF91 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.53
SYNE1Q8NF91 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
SYNE1Q8NF91 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC5.46□□□□□ -1.53
SYNE1Q8NF91 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
SYNE1Q8NF91 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
SYNE1Q8NF91 PAN3-AS1-201ENST00000563843 1351 ntBASIC5.46□□□□□ -1.53
SYNE1Q8NF91 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
SYNE1Q8NF91 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC5.46□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 73 ms