Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.41■□□□□ 0.22
BEST3Q8N1M1 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 FAM220CP-201ENST00000395253 831 ntBASIC16.41■□□□□ 0.22
BEST3Q8N1M1 AC007967.3-201ENST00000434308 558 ntBASIC16.41■□□□□ 0.22
BEST3Q8N1M1 ABCD1P5-201ENST00000445663 754 ntBASIC16.41■□□□□ 0.22
BEST3Q8N1M1 AC073648.2-201ENST00000510116 352 ntBASIC16.41■□□□□ 0.22
BEST3Q8N1M1 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 AC120114.3-201ENST00000611923 658 ntBASIC16.41■□□□□ 0.22
BEST3Q8N1M1 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
BEST3Q8N1M1 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 AL096828.2-201ENST00000567259 1965 ntBASIC16.4■□□□□ 0.22
BEST3Q8N1M1 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 KRT8P47-201ENST00000604727 1398 ntBASIC16.4■□□□□ 0.22
BEST3Q8N1M1 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 AP005117.1-201ENST00000584346 1413 ntBASIC16.4■□□□□ 0.22
BEST3Q8N1M1 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 AL031284.1-201ENST00000419297 478 ntBASIC16.4■□□□□ 0.22
BEST3Q8N1M1 SCARNA2-201ENST00000458748 420 ntBASIC16.4■□□□□ 0.22
BEST3Q8N1M1 RNA5SP419-201ENST00000515908 135 ntBASIC16.4■□□□□ 0.22
BEST3Q8N1M1 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 AC090164.3-201ENST00000610780 2143 ntBASIC16.4■□□□□ 0.22
BEST3Q8N1M1 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 AC022898.2-201ENST00000616822 1312 ntBASIC16.4■□□□□ 0.22
BEST3Q8N1M1 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.4■□□□□ 0.22
BEST3Q8N1M1 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
BEST3Q8N1M1 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
BEST3Q8N1M1 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
BEST3Q8N1M1 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
BEST3Q8N1M1 AL590627.1-203ENST00000421194 1026 ntBASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms