Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
RPL39P62891 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
RPL39P62891 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC12.52□□□□□ -0.4
RPL39P62891 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 AL355802.2-201ENST00000402069 882 ntBASIC12.52□□□□□ -0.41
RPL39P62891 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC12.52□□□□□ -0.41
RPL39P62891 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC12.52□□□□□ -0.41
RPL39P62891 TK2-204ENST00000525974 1178 ntTSL 2 BASIC12.52□□□□□ -0.41
RPL39P62891 RPS15-203ENST00000586096 570 ntTSL 2 BASIC12.52□□□□□ -0.41
RPL39P62891 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC12.52□□□□□ -0.41
RPL39P62891 AC009949.1-201ENST00000623048 1830 ntBASIC12.52□□□□□ -0.41
RPL39P62891 AC022898.2-201ENST00000616822 1312 ntBASIC12.52□□□□□ -0.41
RPL39P62891 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
RPL39P62891 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
RPL39P62891 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 KRT8P7-201ENST00000533003 1432 ntBASIC12.52□□□□□ -0.41
RPL39P62891 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC12.52□□□□□ -0.41
RPL39P62891 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC12.52□□□□□ -0.41
RPL39P62891 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC12.52□□□□□ -0.41
RPL39P62891 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC12.52□□□□□ -0.41
RPL39P62891 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
RPL39P62891 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC12.52□□□□□ -0.41
RPL39P62891 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
RPL39P62891 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC12.51□□□□□ -0.41
RPL39P62891 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC12.51□□□□□ -0.41
RPL39P62891 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
RPL39P62891 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC12.51□□□□□ -0.41
RPL39P62891 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC12.51□□□□□ -0.41
RPL39P62891 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
RPL39P62891 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC12.51□□□□□ -0.41
RPL39P62891 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
RPL39P62891 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
RPL39P62891 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC12.51□□□□□ -0.41
RPL39P62891 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
RPL39P62891 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC12.51□□□□□ -0.41
RPL39P62891 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC12.51□□□□□ -0.41
RPL39P62891 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
RPL39P62891 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 STK24-203ENST00000397517 4578 ntTSL 2 BASIC12.51□□□□□ -0.41
RPL39P62891 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC12.51□□□□□ -0.41
RPL39P62891 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 LINC02199-201ENST00000506655 2702 ntBASIC12.51□□□□□ -0.41
RPL39P62891 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
RPL39P62891 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC12.51□□□□□ -0.41
RPL39P62891 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC12.5□□□□□ -0.41
RPL39P62891 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
RPL39P62891 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC12.5□□□□□ -0.41
RPL39P62891 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC12.5□□□□□ -0.41
RPL39P62891 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
RPL39P62891 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC12.5□□□□□ -0.41
RPL39P62891 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
RPL39P62891 FDX2-206ENST00000492239 773 ntTSL 2 BASIC12.5□□□□□ -0.41
RPL39P62891 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms