Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 GPR32P1-201ENST00000601788 811 ntBASIC18.93■□□□□ 0.62
VCPP55072 AC024563.2-201ENST00000603282 481 ntBASIC18.93■□□□□ 0.62
VCPP55072 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VCPP55072 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.93■□□□□ 0.62
VCPP55072 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VCPP55072 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
VCPP55072 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCPP55072 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCPP55072 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VCPP55072 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VCPP55072 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VCPP55072 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.93■□□□□ 0.62
VCPP55072 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VCPP55072 IRAK3-202ENST00000457197 1853 ntTSL 2 BASIC18.92■□□□□ 0.62
VCPP55072 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
VCPP55072 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC18.92■□□□□ 0.62
VCPP55072 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
VCPP55072 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
VCPP55072 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.92■□□□□ 0.62
VCPP55072 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.92■□□□□ 0.62
VCPP55072 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
VCPP55072 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 FIS1-203ENST00000442303 631 ntTSL 3 BASIC18.92■□□□□ 0.62
VCPP55072 AC004967.1-201ENST00000453589 447 ntBASIC18.92■□□□□ 0.62
VCPP55072 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.92■□□□□ 0.62
VCPP55072 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC18.92■□□□□ 0.62
VCPP55072 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.92■□□□□ 0.62
VCPP55072 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
VCPP55072 AL591684.3-201ENST00000605187 298 ntBASIC18.92■□□□□ 0.62
VCPP55072 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.92■□□□□ 0.62
VCPP55072 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VCPP55072 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCPP55072 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
VCPP55072 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCPP55072 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VCPP55072 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
VCPP55072 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
VCPP55072 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCPP55072 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VCPP55072 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC18.91■□□□□ 0.62
VCPP55072 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.91■□□□□ 0.62
VCPP55072 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCPP55072 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.91■□□□□ 0.62
VCPP55072 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
VCPP55072 HNRNPDP1-201ENST00000439535 754 ntBASIC18.91■□□□□ 0.62
VCPP55072 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.91■□□□□ 0.62
VCPP55072 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC18.91■□□□□ 0.62
VCPP55072 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.91■□□□□ 0.62
VCPP55072 GUSBP12-201ENST00000513727 720 ntBASIC18.91■□□□□ 0.62
VCPP55072 AC027601.4-201ENST00000611259 610 ntBASIC18.91■□□□□ 0.62
VCPP55072 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.91■□□□□ 0.62
VCPP55072 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VCPP55072 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCPP55072 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC18.91■□□□□ 0.62
VCPP55072 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VCPP55072 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
VCPP55072 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VCPP55072 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VCPP55072 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.91■□□□□ 0.62
VCPP55072 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
VCPP55072 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.91■□□□□ 0.62
VCPP55072 AC104109.2-201ENST00000602919 1418 ntBASIC18.91■□□□□ 0.62
VCPP55072 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC18.9■□□□□ 0.62
VCPP55072 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.9■□□□□ 0.62
VCPP55072 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 STK4-201ENST00000372801 2038 ntTSL 2 BASIC18.9■□□□□ 0.62
VCPP55072 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
VCPP55072 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
VCPP55072 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 IGHGP-201ENST00000390555 1178 ntBASIC18.9■□□□□ 0.62
VCPP55072 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.9■□□□□ 0.62
VCPP55072 MED15P5-201ENST00000423150 992 ntBASIC18.9■□□□□ 0.62
VCPP55072 AC112482.1-201ENST00000492080 688 ntBASIC18.9■□□□□ 0.62
VCPP55072 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC18.9■□□□□ 0.62
VCPP55072 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC18.9■□□□□ 0.62
VCPP55072 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.9■□□□□ 0.62
VCPP55072 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
VCPP55072 AC079781.4-201ENST00000641908 219 ntBASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms