Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VCANP13611 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VCANP13611 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VCANP13611 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VCANP13611 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
VCANP13611 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VCANP13611 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC18.11■□□□□ 0.49
VCANP13611 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
VCANP13611 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VCANP13611 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
VCANP13611 RHOQP1-201ENST00000555758 579 ntBASIC18.11■□□□□ 0.49
VCANP13611 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VCANP13611 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VCANP13611 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.11■□□□□ 0.49
VCANP13611 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
VCANP13611 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC18.11■□□□□ 0.49
VCANP13611 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
VCANP13611 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
VCANP13611 RN7SL752P-201ENST00000463779 287 ntBASIC18.11■□□□□ 0.49
VCANP13611 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
VCANP13611 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCANP13611 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCANP13611 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCANP13611 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC18.1■□□□□ 0.49
VCANP13611 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.1■□□□□ 0.49
VCANP13611 AC004233.3-201ENST00000607794 1269 ntBASIC18.1■□□□□ 0.49
VCANP13611 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VCANP13611 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCANP13611 AC007541.1-201ENST00000570282 1469 ntBASIC18.1■□□□□ 0.49
VCANP13611 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
VCANP13611 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCANP13611 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCANP13611 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
VCANP13611 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.1■□□□□ 0.49
VCANP13611 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC18.1■□□□□ 0.49
VCANP13611 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
VCANP13611 SNX29P1-201ENST00000548357 1007 ntBASIC18.1■□□□□ 0.49
VCANP13611 AL583810.1-201ENST00000553344 1045 ntBASIC18.1■□□□□ 0.49
VCANP13611 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
VCANP13611 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCANP13611 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC18.1■□□□□ 0.49
VCANP13611 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCANP13611 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VCANP13611 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.1■□□□□ 0.49
VCANP13611 AC020907.1-201ENST00000616460 1350 ntBASIC18.1■□□□□ 0.49
VCANP13611 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
VCANP13611 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
VCANP13611 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC18.1■□□□□ 0.49
VCANP13611 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.1■□□□□ 0.49
VCANP13611 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCANP13611 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
VCANP13611 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.09■□□□□ 0.49
VCANP13611 MIR149-201ENST00000384879 89 ntBASIC18.09■□□□□ 0.49
VCANP13611 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.09■□□□□ 0.49
VCANP13611 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
VCANP13611 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.09■□□□□ 0.49
VCANP13611 AC009102.3-201ENST00000623118 1491 ntBASIC18.09■□□□□ 0.49
VCANP13611 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 TCF3P1-201ENST00000423021 1937 ntBASIC18.09■□□□□ 0.49
VCANP13611 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.09■□□□□ 0.49
VCANP13611 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.09■□□□□ 0.49
VCANP13611 INE1-201ENST00000456273 945 ntBASIC18.09■□□□□ 0.49
VCANP13611 RN7SL589P-201ENST00000481268 310 ntBASIC18.09■□□□□ 0.49
VCANP13611 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.09■□□□□ 0.49
VCANP13611 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC18.09■□□□□ 0.49
VCANP13611 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
VCANP13611 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
VCANP13611 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
VCANP13611 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
VCANP13611 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC18.08■□□□□ 0.49
VCANP13611 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
VCANP13611 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.08■□□□□ 0.49
VCANP13611 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
VCANP13611 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC18.08■□□□□ 0.49
VCANP13611 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.08■□□□□ 0.48
VCANP13611 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC18.08■□□□□ 0.48
VCANP13611 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC18.08■□□□□ 0.48
VCANP13611 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCANP13611 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.08■□□□□ 0.48
VCANP13611 API5-211ENST00000534695 560 ntTSL 5 BASIC18.08■□□□□ 0.48
VCANP13611 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.08■□□□□ 0.48
VCANP13611 LINC01225-203ENST00000563550 1244 ntBASIC18.08■□□□□ 0.48
VCANP13611 CYB561-216ENST00000582297 897 ntTSL 3 BASIC18.08■□□□□ 0.48
VCANP13611 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC18.08■□□□□ 0.48
VCANP13611 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCANP13611 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
VCANP13611 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCANP13611 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
VCANP13611 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms