Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HMGB3O15347 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HMGB3O15347 CA12-203ENST00000422263 2556 ntTSL 2 BASIC14.26□□□□□ -0.13
HMGB3O15347 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC14.25□□□□□ -0.13
HMGB3O15347 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HMGB3O15347 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
HMGB3O15347 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HMGB3O15347 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC14.25□□□□□ -0.13
HMGB3O15347 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC14.25□□□□□ -0.13
HMGB3O15347 RHEB-204ENST00000472642 900 ntTSL 3 BASIC14.25□□□□□ -0.13
HMGB3O15347 THEM4-205ENST00000489410 643 ntTSL 2 BASIC14.25□□□□□ -0.13
HMGB3O15347 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HMGB3O15347 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC14.25□□□□□ -0.13
HMGB3O15347 PRKY-204ENST00000533551 1019 ntBASIC14.25□□□□□ -0.13
HMGB3O15347 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC14.25□□□□□ -0.13
HMGB3O15347 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC14.25□□□□□ -0.13
HMGB3O15347 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC14.25□□□□□ -0.13
HMGB3O15347 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC14.25□□□□□ -0.13
HMGB3O15347 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC14.25□□□□□ -0.13
HMGB3O15347 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
HMGB3O15347 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 AL121761.2-201ENST00000598007 1648 ntBASIC14.25□□□□□ -0.13
HMGB3O15347 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC14.25□□□□□ -0.13
HMGB3O15347 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC14.25□□□□□ -0.13
HMGB3O15347 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
HMGB3O15347 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
HMGB3O15347 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.25□□□□□ -0.13
HMGB3O15347 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.25□□□□□ -0.13
HMGB3O15347 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HMGB3O15347 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
HMGB3O15347 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC14.24□□□□□ -0.13
HMGB3O15347 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGB3O15347 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC14.24□□□□□ -0.13
HMGB3O15347 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGB3O15347 TSPY26P-202ENST00000565928 3884 ntBASIC14.24□□□□□ -0.13
HMGB3O15347 RAP2B-201ENST00000323534 8351 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
HMGB3O15347 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 SNCG-201ENST00000348795 684 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGB3O15347 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC14.24□□□□□ -0.13
HMGB3O15347 ENSA-205ENST00000361532 792 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGB3O15347 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGB3O15347 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC14.24□□□□□ -0.13
HMGB3O15347 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC14.24□□□□□ -0.13
HMGB3O15347 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
HMGB3O15347 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC14.24□□□□□ -0.13
HMGB3O15347 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC14.24□□□□□ -0.13
HMGB3O15347 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC14.24□□□□□ -0.13
HMGB3O15347 AC092437.1-201ENST00000624794 1048 ntBASIC14.24□□□□□ -0.13
HMGB3O15347 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
HMGB3O15347 AC073111.5-205ENST00000641717 521 ntBASIC14.24□□□□□ -0.13
HMGB3O15347 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 KRT18P55-202ENST00000578578 1546 ntBASIC14.24□□□□□ -0.13
HMGB3O15347 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 HYMAI-201ENST00000635591 3347 ntBASIC14.24□□□□□ -0.13
HMGB3O15347 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
HMGB3O15347 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC14.24□□□□□ -0.13
HMGB3O15347 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
HMGB3O15347 PRPF38A-201ENST00000257181 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
HMGB3O15347 AC011270.2-201ENST00000624293 2550 ntBASIC14.24□□□□□ -0.13
HMGB3O15347 PCDHA14-201ENST00000506751 2298 ntBASIC14.24□□□□□ -0.13
HMGB3O15347 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 AC106886.4-201ENST00000623557 2502 ntBASIC14.23□□□□□ -0.13
HMGB3O15347 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC14.23□□□□□ -0.13
HMGB3O15347 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
HMGB3O15347 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC14.23□□□□□ -0.13
HMGB3O15347 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms