Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP1O15259 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
NPHP1O15259 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
NPHP1O15259 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC22.23■■□□□ 1.15
NPHP1O15259 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC22.22■■□□□ 1.15
NPHP1O15259 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
NPHP1O15259 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC22.22■■□□□ 1.15
NPHP1O15259 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
NPHP1O15259 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
NPHP1O15259 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
NPHP1O15259 AC018445.3-201ENST00000624177 1945 ntBASIC22.22■■□□□ 1.15
NPHP1O15259 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
NPHP1O15259 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
NPHP1O15259 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
NPHP1O15259 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
NPHP1O15259 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
NPHP1O15259 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC22.22■■□□□ 1.15
NPHP1O15259 AL020989.1-201ENST00000422979 469 ntBASIC22.22■■□□□ 1.15
NPHP1O15259 KRT18P2-201ENST00000447938 1258 ntBASIC22.22■■□□□ 1.15
NPHP1O15259 CFL1-202ENST00000524553 860 ntTSL 2 BASIC22.22■■□□□ 1.15
NPHP1O15259 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC22.22■■□□□ 1.15
NPHP1O15259 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC22.22■■□□□ 1.15
NPHP1O15259 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
NPHP1O15259 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC22.22■■□□□ 1.15
NPHP1O15259 AL589182.2-201ENST00000619332 1049 ntBASIC22.22■■□□□ 1.15
NPHP1O15259 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC22.22■■□□□ 1.15
NPHP1O15259 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC22.22■■□□□ 1.15
NPHP1O15259 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
NPHP1O15259 AC002310.6-201ENST00000624451 1377 ntBASIC22.22■■□□□ 1.15
NPHP1O15259 SIRPAP1-201ENST00000448467 1770 ntBASIC22.22■■□□□ 1.15
NPHP1O15259 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
NPHP1O15259 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC22.22■■□□□ 1.15
NPHP1O15259 SIGLEC16-201ENST00000599858 1437 ntBASIC22.22■■□□□ 1.15
NPHP1O15259 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
NPHP1O15259 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC22.22■■□□□ 1.15
NPHP1O15259 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
NPHP1O15259 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC22.22■■□□□ 1.15
NPHP1O15259 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
NPHP1O15259 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
NPHP1O15259 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC22.21■■□□□ 1.15
NPHP1O15259 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC22.21■■□□□ 1.15
NPHP1O15259 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC22.21■■□□□ 1.15
NPHP1O15259 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
NPHP1O15259 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC22.21■■□□□ 1.15
NPHP1O15259 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC22.21■■□□□ 1.15
NPHP1O15259 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC22.21■■□□□ 1.15
NPHP1O15259 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC22.21■■□□□ 1.15
NPHP1O15259 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC22.21■■□□□ 1.15
NPHP1O15259 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC22.21■■□□□ 1.15
NPHP1O15259 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC22.21■■□□□ 1.15
NPHP1O15259 AC022898.2-201ENST00000616822 1312 ntBASIC22.21■■□□□ 1.15
NPHP1O15259 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC22.21■■□□□ 1.15
NPHP1O15259 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC22.21■■□□□ 1.15
NPHP1O15259 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC22.21■■□□□ 1.15
NPHP1O15259 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
NPHP1O15259 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
NPHP1O15259 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP1O15259 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP1O15259 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP1O15259 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC22.2■■□□□ 1.14
NPHP1O15259 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
NPHP1O15259 AP006288.1-201ENST00000446065 395 ntBASIC22.2■■□□□ 1.14
NPHP1O15259 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC22.2■■□□□ 1.14
NPHP1O15259 MIR4469-201ENST00000583919 79 ntBASIC22.2■■□□□ 1.14
NPHP1O15259 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP1O15259 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP1O15259 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC22.2■■□□□ 1.14
NPHP1O15259 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC22.2■■□□□ 1.14
NPHP1O15259 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
NPHP1O15259 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
NPHP1O15259 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC22.2■■□□□ 1.14
NPHP1O15259 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC22.2■■□□□ 1.14
NPHP1O15259 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC22.2■■□□□ 1.14
NPHP1O15259 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NPHP1O15259 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC22.19■■□□□ 1.14
NPHP1O15259 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC22.19■■□□□ 1.14
NPHP1O15259 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NPHP1O15259 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
NPHP1O15259 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
NPHP1O15259 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC22.19■■□□□ 1.14
NPHP1O15259 ELK2BP-201ENST00000415014 1224 ntBASIC22.19■■□□□ 1.14
NPHP1O15259 MCCD1P2-201ENST00000423228 335 ntBASIC22.19■■□□□ 1.14
NPHP1O15259 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC22.19■■□□□ 1.14
NPHP1O15259 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC22.19■■□□□ 1.14
NPHP1O15259 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
NPHP1O15259 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
NPHP1O15259 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms