Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 AC073508.3-201ENST00000619697 1419 ntBASIC18.49■□□□□ 0.55
PCDHA3Q9Y5H8 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 TERF1P1-201ENST00000311003 1181 ntBASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 COPE-203ENST00000351079 907 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 AC096633.1-201ENST00000422446 749 ntBASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 ZNF444P1-201ENST00000559497 298 ntBASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 GPR32P1-201ENST00000601788 811 ntBASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 AC005363.2-201ENST00000618631 242 ntBASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 AC097493.4-201ENST00000641197 219 ntBASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 LINC01311-201ENST00000565162 1445 ntBASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDHA3Q9Y5H8 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 AC117947.1-201ENST00000427448 529 ntBASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 AL137013.1-201ENST00000432946 1228 ntBASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 SPEG-225ENST00000617028 815 ntTSL 5 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC18.47■□□□□ 0.55
PCDHA3Q9Y5H8 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 HBZP1-201ENST00000354915 429 ntBASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC18.46■□□□□ 0.55
PCDHA3Q9Y5H8 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHA3Q9Y5H8 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHA3Q9Y5H8 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
PCDHA3Q9Y5H8 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
PCDHA3Q9Y5H8 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC18.45■□□□□ 0.54
PCDHA3Q9Y5H8 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
PCDHA3Q9Y5H8 TNRC18P3-201ENST00000441896 2691 ntBASIC18.45■□□□□ 0.54
PCDHA3Q9Y5H8 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.45■□□□□ 0.54
PCDHA3Q9Y5H8 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms