Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC005104.2-201ENST00000427818 678 ntBASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 FAM210CP-201ENST00000445714 574 ntBASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 KRT8P26-201ENST00000534154 1276 ntBASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS9D1Q9Y2B5 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 CNP-204ENST00000472031 1019 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 AL590326.2-201ENST00000625139 305 ntBASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VPS9D1Q9Y2B5 REXO1L11P-201ENST00000620964 1927 ntBASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 OR6D1P-203ENST00000641209 4860 ntBASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 AL031133.1-201ENST00000406807 723 ntBASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 RN7SL606P-201ENST00000472779 293 ntBASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 AL592071.1-201ENST00000611956 408 ntBASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 IGHV3-41-201ENST00000613121 348 ntBASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 HARS-201ENST00000307633 1780 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS9D1Q9Y2B5 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
VPS9D1Q9Y2B5 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms