Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH9Q9ULB4 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH9Q9ULB4 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.68■□□□□ 0.58
CDH9Q9ULB4 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CDH9Q9ULB4 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH9Q9ULB4 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH9Q9ULB4 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC18.68■□□□□ 0.58
CDH9Q9ULB4 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CDH9Q9ULB4 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC18.68■□□□□ 0.58
CDH9Q9ULB4 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 AC003669.1-201ENST00000334569 611 ntBASIC18.67■□□□□ 0.58
CDH9Q9ULB4 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 MYCLP1-201ENST00000372451 1075 ntBASIC18.67■□□□□ 0.58
CDH9Q9ULB4 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 AL020989.1-201ENST00000422979 469 ntBASIC18.67■□□□□ 0.58
CDH9Q9ULB4 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 PENK-208ENST00000523051 772 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 AC148477.8-201ENST00000624298 468 ntBASIC18.67■□□□□ 0.58
CDH9Q9ULB4 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 HLA-A-201ENST00000376802 1334 ntBASIC18.67■□□□□ 0.58
CDH9Q9ULB4 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
CDH9Q9ULB4 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 KLF4P1-201ENST00000412782 1185 ntBASIC18.66■□□□□ 0.58
CDH9Q9ULB4 AL031284.1-201ENST00000419297 478 ntBASIC18.66■□□□□ 0.58
CDH9Q9ULB4 PRYP5-201ENST00000451909 266 ntBASIC18.66■□□□□ 0.58
CDH9Q9ULB4 BX005266.1-201ENST00000473402 457 ntBASIC18.66■□□□□ 0.58
CDH9Q9ULB4 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 RNA5SP419-201ENST00000515908 135 ntBASIC18.66■□□□□ 0.58
CDH9Q9ULB4 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 AP001005.1-201ENST00000571755 1248 ntBASIC18.66■□□□□ 0.58
CDH9Q9ULB4 PAM16-208ENST00000573553 722 ntTSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 STK25P1-201ENST00000585406 838 ntBASIC18.66■□□□□ 0.58
CDH9Q9ULB4 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 AL022326.1-202ENST00000641533 845 ntBASIC18.66■□□□□ 0.58
CDH9Q9ULB4 AC006116.8-202ENST00000587620 1550 ntBASIC18.66■□□□□ 0.58
CDH9Q9ULB4 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
CDH9Q9ULB4 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 REXO1L11P-201ENST00000620964 1927 ntBASIC18.65■□□□□ 0.58
CDH9Q9ULB4 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC18.65■□□□□ 0.58
CDH9Q9ULB4 MTDHP4-201ENST00000600287 670 ntBASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 63.7 ms