Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 IL9RP2-201ENST00000423948 1312 ntBASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 AL049757.1-201ENST00000616842 1596 ntBASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 RPS2P28-201ENST00000314255 741 ntBASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 TEX30-205ENST00000376029 959 ntTSL 2 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 SPDYE21P-201ENST00000413323 827 ntBASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 RPS2P1-201ENST00000434010 821 ntBASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 AC019129.2-201ENST00000609837 1235 ntBASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 PRKN-208ENST00000610470 531 ntTSL 2 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 PRKN-209ENST00000612485 225 ntTSL 5 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 AC073592.5-201ENST00000624854 528 ntBASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CLCF1Q9UBD9 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 BX005266.1-201ENST00000473402 457 ntBASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 AC139887.3-201ENST00000568585 713 ntBASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 MNT-208ENST00000575394 606 ntTSL 4 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 MTDHP4-201ENST00000600287 670 ntBASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CLCF1Q9UBD9 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC15.71■□□□□ 0.1
CLCF1Q9UBD9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
CLCF1Q9UBD9 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
CLCF1Q9UBD9 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 PC-208ENST00000529047 1607 ntTSL 3 BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 OR7E14P-202ENST00000530490 1290 ntBASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 AL022326.1-202ENST00000641533 845 ntBASIC15.7■□□□□ 0.1
CLCF1Q9UBD9 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms