Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.14■□□□□ 0.33
CUEDC1Q9NWM3 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 AC125634.1-201ENST00000438758 1403 ntBASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 NUS1P1-201ENST00000446295 882 ntBASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 AL138831.2-201ENST00000606564 490 ntBASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 AC116407.2-201ENST00000613639 860 ntBASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 HSD11B1L-223ENST00000616276 1580 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CUEDC1Q9NWM3 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 NSUN5P1-202ENST00000421140 1535 ntBASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 NSUN5P2-203ENST00000457352 1529 ntBASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 AC010460.3-201ENST00000511359 1579 ntBASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 IGHV3-47-201ENST00000425060 335 ntBASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 MEG3-211ENST00000452514 461 ntTSL 3 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CUEDC1Q9NWM3 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CUEDC1Q9NWM3 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms