Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 IGHGP-201ENST00000390555 1178 ntBASIC18.29■□□□□ 0.52
PCDH9Q9HC56 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 FAM86EP-206ENST00000510506 987 ntBASIC18.29■□□□□ 0.52
PCDH9Q9HC56 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 AC105001.2-201ENST00000554914 1753 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 AD000864.1-201ENST00000624076 2295 ntBASIC18.29■□□□□ 0.52
PCDH9Q9HC56 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PCDH9Q9HC56 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 AC005332.1-201ENST00000577698 1310 ntBASIC18.28■□□□□ 0.52
PCDH9Q9HC56 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 TPR-209ENST00000613151 2478 ntTSL 5 BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 RNF126P1-202ENST00000569893 925 ntBASIC18.28■□□□□ 0.52
PCDH9Q9HC56 AC005332.3-201ENST00000589904 676 ntBASIC18.28■□□□□ 0.52
PCDH9Q9HC56 AC004263.2-201ENST00000617183 678 ntBASIC18.28■□□□□ 0.52
PCDH9Q9HC56 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PCDH9Q9HC56 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 GPR32P1-201ENST00000601788 811 ntBASIC18.27■□□□□ 0.52
PCDH9Q9HC56 NDUFV2-AS1-203ENST00000608008 779 ntBASIC18.27■□□□□ 0.52
PCDH9Q9HC56 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.27■□□□□ 0.52
PCDH9Q9HC56 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCDH9Q9HC56 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCDH9Q9HC56 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PCDH9Q9HC56 AC106820.2-201ENST00000563775 3264 ntBASIC18.27■□□□□ 0.51
PCDH9Q9HC56 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
PCDH9Q9HC56 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PCDH9Q9HC56 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PCDH9Q9HC56 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PCDH9Q9HC56 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PCDH9Q9HC56 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.26■□□□□ 0.51
PCDH9Q9HC56 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms