Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC22.68■■□□□ 1.22
SHANK3Q9BYB0 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
SHANK3Q9BYB0 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC22.68■■□□□ 1.22
SHANK3Q9BYB0 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC22.68■■□□□ 1.22
SHANK3Q9BYB0 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 WIZP1-201ENST00000531444 2299 ntBASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 AP000997.3-201ENST00000623333 2250 ntBASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
SHANK3Q9BYB0 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 NEK7-201ENST00000367383 586 ntTSL 2 BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 GPS2P2-201ENST00000430745 888 ntBASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 AL135744.1-201ENST00000565098 629 ntBASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 AC015911.4-201ENST00000588022 1070 ntBASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
SHANK3Q9BYB0 MIR661-201ENST00000384842 89 ntBASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 AC004835.2-201ENST00000603762 682 ntBASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 LINC00628-201ENST00000628516 1289 ntBASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 AC112191.1-201ENST00000523689 701 ntBASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 AC116407.2-201ENST00000613639 860 ntBASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
SHANK3Q9BYB0 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SHANK3Q9BYB0 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC22.64■■□□□ 1.22
SHANK3Q9BYB0 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
SHANK3Q9BYB0 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC22.64■■□□□ 1.22
SHANK3Q9BYB0 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SHANK3Q9BYB0 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC22.64■■□□□ 1.22
SHANK3Q9BYB0 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
SHANK3Q9BYB0 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SHANK3Q9BYB0 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
SHANK3Q9BYB0 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
SHANK3Q9BYB0 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC22.64■■□□□ 1.22
SHANK3Q9BYB0 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC22.64■■□□□ 1.22
SHANK3Q9BYB0 AL135999.2-201ENST00000622438 1686 ntBASIC22.64■■□□□ 1.21
SHANK3Q9BYB0 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SHANK3Q9BYB0 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SHANK3Q9BYB0 HLA-V-201ENST00000429037 534 ntBASIC22.64■■□□□ 1.21
SHANK3Q9BYB0 TIMM8BP1-201ENST00000452384 211 ntBASIC22.64■■□□□ 1.21
SHANK3Q9BYB0 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
SHANK3Q9BYB0 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
SHANK3Q9BYB0 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC22.64■■□□□ 1.21
SHANK3Q9BYB0 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.21
SHANK3Q9BYB0 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SHANK3Q9BYB0 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
SHANK3Q9BYB0 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC22.64■■□□□ 1.21
SHANK3Q9BYB0 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
SHANK3Q9BYB0 AL121761.2-201ENST00000598007 1648 ntBASIC22.63■■□□□ 1.21
SHANK3Q9BYB0 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
SHANK3Q9BYB0 HARS-203ENST00000431330 1774 ntTSL 2 BASIC22.63■■□□□ 1.21
SHANK3Q9BYB0 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
SHANK3Q9BYB0 COPE-202ENST00000349893 948 ntTSL 2 BASIC22.63■■□□□ 1.21
SHANK3Q9BYB0 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC22.63■■□□□ 1.21
SHANK3Q9BYB0 AC051619.7-201ENST00000568314 623 ntBASIC22.63■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms