Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC18.31■□□□□ 0.52
CDX2Q99626 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CDX2Q99626 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CDX2Q99626 PALM-208ENST00000592155 2272 ntTSL 4 BASIC18.3■□□□□ 0.52
CDX2Q99626 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX2Q99626 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDX2Q99626 AL590787.1-201ENST00000568856 1315 ntBASIC18.3■□□□□ 0.52
CDX2Q99626 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDX2Q99626 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDX2Q99626 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.3■□□□□ 0.52
CDX2Q99626 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX2Q99626 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX2Q99626 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CDX2Q99626 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
CDX2Q99626 AC022210.1-201ENST00000449856 793 ntBASIC18.3■□□□□ 0.52
CDX2Q99626 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
CDX2Q99626 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.3■□□□□ 0.52
CDX2Q99626 REEP4-207ENST00000523293 913 ntTSL 3 BASIC18.3■□□□□ 0.52
CDX2Q99626 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC18.3■□□□□ 0.52
CDX2Q99626 RAB43P1-201ENST00000561790 589 ntBASIC18.3■□□□□ 0.52
CDX2Q99626 AC140912.1-201ENST00000577171 1054 ntBASIC18.3■□□□□ 0.52
CDX2Q99626 SPTSSB-204ENST00000617024 1292 ntBASIC18.3■□□□□ 0.52
CDX2Q99626 AL033527.4-201ENST00000641026 673 ntBASIC18.3■□□□□ 0.52
CDX2Q99626 AC007541.1-201ENST00000570282 1469 ntBASIC18.3■□□□□ 0.52
CDX2Q99626 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX2Q99626 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CDX2Q99626 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
CDX2Q99626 AL499627.1-201ENST00000569373 2188 ntBASIC18.3■□□□□ 0.52
CDX2Q99626 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.3■□□□□ 0.52
CDX2Q99626 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX2Q99626 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC18.29■□□□□ 0.52
CDX2Q99626 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.29■□□□□ 0.52
CDX2Q99626 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.29■□□□□ 0.52
CDX2Q99626 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX2Q99626 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX2Q99626 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CDX2Q99626 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC18.29■□□□□ 0.52
CDX2Q99626 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC18.29■□□□□ 0.52
CDX2Q99626 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX2Q99626 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC18.29■□□□□ 0.52
CDX2Q99626 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC18.29■□□□□ 0.52
CDX2Q99626 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC18.29■□□□□ 0.52
CDX2Q99626 AL512384.1-201ENST00000406683 331 ntBASIC18.29■□□□□ 0.52
CDX2Q99626 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC18.29■□□□□ 0.52
CDX2Q99626 API5-211ENST00000534695 560 ntTSL 5 BASIC18.29■□□□□ 0.52
CDX2Q99626 AC092552.1-201ENST00000547243 906 ntBASIC18.29■□□□□ 0.52
CDX2Q99626 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX2Q99626 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.29■□□□□ 0.52
CDX2Q99626 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.29■□□□□ 0.52
CDX2Q99626 AC132938.2-201ENST00000579188 680 ntBASIC18.29■□□□□ 0.52
CDX2Q99626 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CDX2Q99626 AL161645.1-201ENST00000622716 1255 ntBASIC18.29■□□□□ 0.52
CDX2Q99626 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC18.29■□□□□ 0.52
CDX2Q99626 AL591163.1-201ENST00000641757 987 ntBASIC18.29■□□□□ 0.52
CDX2Q99626 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
CDX2Q99626 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC18.29■□□□□ 0.52
CDX2Q99626 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX2Q99626 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CDX2Q99626 AC009336.1-201ENST00000608941 1553 ntBASIC18.29■□□□□ 0.52
CDX2Q99626 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CDX2Q99626 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC18.29■□□□□ 0.52
CDX2Q99626 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.28■□□□□ 0.52
CDX2Q99626 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.28■□□□□ 0.52
CDX2Q99626 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.28■□□□□ 0.52
CDX2Q99626 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.28■□□□□ 0.52
CDX2Q99626 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.28■□□□□ 0.52
CDX2Q99626 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 FAM86MP-201ENST00000340703 885 ntBASIC18.28■□□□□ 0.52
CDX2Q99626 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC18.28■□□□□ 0.52
CDX2Q99626 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC18.28■□□□□ 0.52
CDX2Q99626 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.28■□□□□ 0.52
CDX2Q99626 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.28■□□□□ 0.52
CDX2Q99626 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC18.28■□□□□ 0.52
CDX2Q99626 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.28■□□□□ 0.52
CDX2Q99626 LINC00565-201ENST00000562710 2331 ntBASIC18.28■□□□□ 0.52
CDX2Q99626 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.28■□□□□ 0.52
CDX2Q99626 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.28■□□□□ 0.52
CDX2Q99626 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CDX2Q99626 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CDX2Q99626 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDX2Q99626 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CDX2Q99626 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDX2Q99626 AC129492.6-201ENST00000611383 1305 ntBASIC18.27■□□□□ 0.52
CDX2Q99626 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDX2Q99626 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CDX2Q99626 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CDX2Q99626 HAUS4P1-201ENST00000406739 1145 ntBASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms