Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CFAP54Q96N23 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CFAP54Q96N23 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CFAP54Q96N23 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
CFAP54Q96N23 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CFAP54Q96N23 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CFAP54Q96N23 AC092658.1-201ENST00000505836 891 ntBASIC17.21■□□□□ 0.35
CFAP54Q96N23 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC17.21■□□□□ 0.35
CFAP54Q96N23 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.21■□□□□ 0.34
CFAP54Q96N23 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.21■□□□□ 0.34
CFAP54Q96N23 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
CFAP54Q96N23 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 AC008687.5-201ENST00000593746 558 ntBASIC17.2■□□□□ 0.34
CFAP54Q96N23 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 AL024508.2-201ENST00000607749 1894 ntBASIC17.2■□□□□ 0.34
CFAP54Q96N23 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.2■□□□□ 0.34
CFAP54Q96N23 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
CFAP54Q96N23 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 AC068587.9-201ENST00000641814 219 ntBASIC17.19■□□□□ 0.34
CFAP54Q96N23 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 AL512384.1-201ENST00000406683 331 ntBASIC17.19■□□□□ 0.34
CFAP54Q96N23 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 AC092580.3-201ENST00000430932 139 ntBASIC17.19■□□□□ 0.34
CFAP54Q96N23 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 AC010460.3-201ENST00000511359 1579 ntBASIC17.19■□□□□ 0.34
CFAP54Q96N23 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 AC019129.2-201ENST00000609837 1235 ntBASIC17.19■□□□□ 0.34
CFAP54Q96N23 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
CFAP54Q96N23 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
CFAP54Q96N23 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CFAP54Q96N23 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CFAP54Q96N23 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CFAP54Q96N23 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CFAP54Q96N23 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CFAP54Q96N23 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.18■□□□□ 0.34
CFAP54Q96N23 PPP6R2P1-201ENST00000450880 1275 ntBASIC17.18■□□□□ 0.34
CFAP54Q96N23 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CFAP54Q96N23 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.18■□□□□ 0.34
CFAP54Q96N23 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.18■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms