Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AC005336.2-201ENST00000593183 939 ntBASIC5.48□□□□□ -1.53
SYNE1Q8NF91 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 INTS4P1-201ENST00000438455 1935 ntBASIC5.48□□□□□ -1.53
SYNE1Q8NF91 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AC136604.3-201ENST00000508188 429 ntTSL 3 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 KRT18P13-201ENST00000400056 1290 ntBASIC5.48□□□□□ -1.53
SYNE1Q8NF91 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AP000974.1-201ENST00000623909 2387 ntBASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AP000593.1-201ENST00000393668 712 ntBASIC5.48□□□□□ -1.53
SYNE1Q8NF91 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AC106730.1-201ENST00000566722 1090 ntBASIC5.48□□□□□ -1.53
SYNE1Q8NF91 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AC012640.2-201ENST00000561606 901 ntBASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 AC141586.3-201ENST00000562166 1838 ntBASIC5.48□□□□□ -1.53
SYNE1Q8NF91 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
SYNE1Q8NF91 RPS2P1-201ENST00000434010 821 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 OR7E47P-204ENST00000575924 449 ntBASIC5.47□□□□□ -1.53
SYNE1Q8NF91 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
SYNE1Q8NF91 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms