Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.13□□□□□ -0.15
CLRN3Q8NCR9 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 AK1-201ENST00000223836 736 ntTSL 3 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 MFSD11-216ENST00000590393 1141 ntBASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 AL359258.3-201ENST00000622910 2331 ntBASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLRN3Q8NCR9 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 MYLKP1-201ENST00000509077 1580 ntBASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.11□□□□□ -0.15
CLRN3Q8NCR9 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms