Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CX3CL1P78423 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CX3CL1P78423 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CX3CL1P78423 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CX3CL1P78423 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CX3CL1P78423 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
CX3CL1P78423 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC14.3□□□□□ -0.12
CX3CL1P78423 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CX3CL1P78423 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
CX3CL1P78423 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CX3CL1P78423 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
CX3CL1P78423 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
CX3CL1P78423 Z83836.1-201ENST00000624605 1642 ntBASIC14.3□□□□□ -0.12
CX3CL1P78423 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
CX3CL1P78423 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC14.3□□□□□ -0.12
CX3CL1P78423 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC14.29□□□□□ -0.12
CX3CL1P78423 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CX3CL1P78423 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC14.29□□□□□ -0.12
CX3CL1P78423 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC14.29□□□□□ -0.12
CX3CL1P78423 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC14.29□□□□□ -0.12
CX3CL1P78423 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC14.29□□□□□ -0.12
CX3CL1P78423 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 TSPY12P-201ENST00000421279 868 ntBASIC14.29□□□□□ -0.12
CX3CL1P78423 KRT18P65-201ENST00000439811 1286 ntBASIC14.29□□□□□ -0.12
CX3CL1P78423 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC14.29□□□□□ -0.12
CX3CL1P78423 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.29□□□□□ -0.12
CX3CL1P78423 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC14.29□□□□□ -0.12
CX3CL1P78423 GXYLT1P4-201ENST00000613576 1192 ntBASIC14.29□□□□□ -0.12
CX3CL1P78423 AL121956.5-201ENST00000625261 221 ntBASIC14.29□□□□□ -0.12
CX3CL1P78423 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC14.29□□□□□ -0.12
CX3CL1P78423 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC14.29□□□□□ -0.12
CX3CL1P78423 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC14.29□□□□□ -0.12
CX3CL1P78423 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CX3CL1P78423 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
CX3CL1P78423 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
CX3CL1P78423 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC14.29□□□□□ -0.12
CX3CL1P78423 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC14.29□□□□□ -0.12
CX3CL1P78423 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
CX3CL1P78423 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
CX3CL1P78423 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 BAALC-202ENST00000306391 243 ntTSL 5 BASIC14.28□□□□□ -0.12
CX3CL1P78423 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CX3CL1P78423 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
CX3CL1P78423 BAALC-204ENST00000330955 222 ntTSL 5 BASIC14.28□□□□□ -0.12
CX3CL1P78423 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC14.28□□□□□ -0.12
CX3CL1P78423 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC14.28□□□□□ -0.12
CX3CL1P78423 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
CX3CL1P78423 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CX3CL1P78423 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 DDT-202ENST00000398344 713 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 DDT-203ENST00000403754 569 ntTSL 3 BASIC14.28□□□□□ -0.12
CX3CL1P78423 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC14.28□□□□□ -0.12
CX3CL1P78423 DDT-206ENST00000430101 573 ntTSL 2 BASIC14.28□□□□□ -0.12
CX3CL1P78423 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
CX3CL1P78423 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC14.28□□□□□ -0.12
CX3CL1P78423 CD320-202ENST00000537716 1119 ntTSL 2 BASIC14.28□□□□□ -0.12
CX3CL1P78423 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
CX3CL1P78423 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC14.28□□□□□ -0.12
CX3CL1P78423 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC14.28□□□□□ -0.12
CX3CL1P78423 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 74 ms