Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.4■□□□□ 0.38
PKNOX1P55347 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.4■□□□□ 0.38
PKNOX1P55347 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PKNOX1P55347 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
PKNOX1P55347 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
PKNOX1P55347 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.4■□□□□ 0.38
PKNOX1P55347 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PKNOX1P55347 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.39■□□□□ 0.38
PKNOX1P55347 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PKNOX1P55347 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
PKNOX1P55347 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
PKNOX1P55347 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
PKNOX1P55347 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
PKNOX1P55347 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.39■□□□□ 0.37
PKNOX1P55347 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC17.39■□□□□ 0.37
PKNOX1P55347 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
PKNOX1P55347 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PKNOX1P55347 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PKNOX1P55347 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.39■□□□□ 0.37
PKNOX1P55347 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.39■□□□□ 0.37
PKNOX1P55347 KRT18P65-201ENST00000439811 1286 ntBASIC17.39■□□□□ 0.37
PKNOX1P55347 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.39■□□□□ 0.37
PKNOX1P55347 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.39■□□□□ 0.37
PKNOX1P55347 CD81-212ENST00000526072 1172 ntTSL 5 BASIC17.39■□□□□ 0.37
PKNOX1P55347 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.39■□□□□ 0.37
PKNOX1P55347 AC024563.2-201ENST00000603282 481 ntBASIC17.39■□□□□ 0.37
PKNOX1P55347 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.39■□□□□ 0.37
PKNOX1P55347 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PKNOX1P55347 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PKNOX1P55347 UBALD1-205ENST00000590891 2641 ntBASIC17.39■□□□□ 0.37
PKNOX1P55347 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
PKNOX1P55347 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PKNOX1P55347 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
PKNOX1P55347 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
PKNOX1P55347 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PKNOX1P55347 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.39■□□□□ 0.37
PKNOX1P55347 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
PKNOX1P55347 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PKNOX1P55347 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PKNOX1P55347 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
PKNOX1P55347 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.38■□□□□ 0.37
PKNOX1P55347 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC17.38■□□□□ 0.37
PKNOX1P55347 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.38■□□□□ 0.37
PKNOX1P55347 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.38■□□□□ 0.37
PKNOX1P55347 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC17.38■□□□□ 0.37
PKNOX1P55347 GCSHP2-201ENST00000560971 527 ntBASIC17.38■□□□□ 0.37
PKNOX1P55347 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.38■□□□□ 0.37
PKNOX1P55347 USF2-205ENST00000594064 1179 ntTSL 2 BASIC17.38■□□□□ 0.37
PKNOX1P55347 AL138966.2-201ENST00000621997 464 ntBASIC17.38■□□□□ 0.37
PKNOX1P55347 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PKNOX1P55347 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.38■□□□□ 0.37
PKNOX1P55347 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.38■□□□□ 0.37
PKNOX1P55347 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PKNOX1P55347 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
PKNOX1P55347 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.38■□□□□ 0.37
PKNOX1P55347 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PKNOX1P55347 LINC00304-203ENST00000565008 1864 ntBASIC17.37■□□□□ 0.37
PKNOX1P55347 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
PKNOX1P55347 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PKNOX1P55347 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.37■□□□□ 0.37
PKNOX1P55347 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PKNOX1P55347 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PKNOX1P55347 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.37■□□□□ 0.37
PKNOX1P55347 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PKNOX1P55347 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PKNOX1P55347 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC17.37■□□□□ 0.37
PKNOX1P55347 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC17.37■□□□□ 0.37
PKNOX1P55347 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
PKNOX1P55347 DET1-205ENST00000558413 583 ntTSL 4 BASIC17.37■□□□□ 0.37
PKNOX1P55347 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.37■□□□□ 0.37
PKNOX1P55347 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms