Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.4■□□□□ 0.86
CTCFP49711 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.4■□□□□ 0.86
CTCFP49711 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC20.4■□□□□ 0.86
CTCFP49711 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 ADH5P3-201ENST00000433842 1137 ntBASIC20.4■□□□□ 0.86
CTCFP49711 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC20.4■□□□□ 0.86
CTCFP49711 AC112191.1-201ENST00000523689 701 ntBASIC20.4■□□□□ 0.86
CTCFP49711 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC20.4■□□□□ 0.86
CTCFP49711 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.4■□□□□ 0.86
CTCFP49711 IGHV3OR16-6-201ENST00000568775 360 ntBASIC20.4■□□□□ 0.86
CTCFP49711 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 AC017083.2-201ENST00000608069 979 ntBASIC20.4■□□□□ 0.86
CTCFP49711 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.4■□□□□ 0.86
CTCFP49711 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CTCFP49711 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CTCFP49711 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.86
CTCFP49711 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
CTCFP49711 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.39■□□□□ 0.86
CTCFP49711 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC20.39■□□□□ 0.86
CTCFP49711 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CTCFP49711 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTCFP49711 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC20.39■□□□□ 0.85
CTCFP49711 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CTCFP49711 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC20.39■□□□□ 0.85
CTCFP49711 WRB-204ENST00000398753 699 ntTSL 3 BASIC20.39■□□□□ 0.85
CTCFP49711 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC20.39■□□□□ 0.85
CTCFP49711 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CTCFP49711 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC20.39■□□□□ 0.85
CTCFP49711 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC20.39■□□□□ 0.85
CTCFP49711 AC112698.1-201ENST00000510299 916 ntBASIC20.39■□□□□ 0.85
CTCFP49711 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC20.39■□□□□ 0.85
CTCFP49711 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.39■□□□□ 0.85
CTCFP49711 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC20.39■□□□□ 0.85
CTCFP49711 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.39■□□□□ 0.85
CTCFP49711 AC026120.1-201ENST00000611536 926 ntBASIC20.39■□□□□ 0.85
CTCFP49711 AL805961.1-202ENST00000641562 540 ntBASIC20.39■□□□□ 0.85
CTCFP49711 AC068587.9-201ENST00000641814 219 ntBASIC20.39■□□□□ 0.85
CTCFP49711 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTCFP49711 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CTCFP49711 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CTCFP49711 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
CTCFP49711 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC20.38■□□□□ 0.85
CTCFP49711 AC093484.2-201ENST00000580996 2166 ntBASIC20.38■□□□□ 0.85
CTCFP49711 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC20.38■□□□□ 0.85
CTCFP49711 LINC00602-201ENST00000629776 2065 ntBASIC20.38■□□□□ 0.85
CTCFP49711 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.38■□□□□ 0.85
CTCFP49711 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 RPL30-202ENST00000396070 440 ntTSL 2 BASIC20.38■□□□□ 0.85
CTCFP49711 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC20.38■□□□□ 0.85
CTCFP49711 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC20.38■□□□□ 0.85
CTCFP49711 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC20.38■□□□□ 0.85
CTCFP49711 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CTCFP49711 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.38■□□□□ 0.85
CTCFP49711 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC20.38■□□□□ 0.85
CTCFP49711 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.38■□□□□ 0.85
CTCFP49711 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC20.38■□□□□ 0.85
CTCFP49711 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CTCFP49711 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CTCFP49711 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CTCFP49711 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CTCFP49711 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTCFP49711 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CTCFP49711 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTCFP49711 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTCFP49711 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTCFP49711 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTCFP49711 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTCFP49711 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTCFP49711 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC20.37■□□□□ 0.85
CTCFP49711 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC20.37■□□□□ 0.85
CTCFP49711 CYB561-217ENST00000582997 877 ntTSL 5 BASIC20.37■□□□□ 0.85
CTCFP49711 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC20.37■□□□□ 0.85
CTCFP49711 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CTCFP49711 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CTCFP49711 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CTCFP49711 AC005332.7-201ENST00000614046 2005 ntBASIC20.37■□□□□ 0.85
CTCFP49711 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms