Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.2■□□□□ 0.18
RFC3P40938 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.2■□□□□ 0.18
RFC3P40938 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC16.2■□□□□ 0.18
RFC3P40938 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 RBSN-204ENST00000449050 903 ntTSL 2 BASIC16.2■□□□□ 0.18
RFC3P40938 AC073648.2-201ENST00000510116 352 ntBASIC16.2■□□□□ 0.18
RFC3P40938 RNA5SP419-201ENST00000515908 135 ntBASIC16.2■□□□□ 0.18
RFC3P40938 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC16.2■□□□□ 0.18
RFC3P40938 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.2■□□□□ 0.18
RFC3P40938 REXO1L9P-201ENST00000604264 2108 ntBASIC16.2■□□□□ 0.18
RFC3P40938 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC16.2■□□□□ 0.18
RFC3P40938 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.2■□□□□ 0.18
RFC3P40938 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 PAN3-AS1-201ENST00000563843 1351 ntBASIC16.2■□□□□ 0.18
RFC3P40938 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.2■□□□□ 0.18
RFC3P40938 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.2■□□□□ 0.18
RFC3P40938 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC16.2■□□□□ 0.18
RFC3P40938 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
RFC3P40938 AP005117.1-201ENST00000584346 1413 ntBASIC16.19■□□□□ 0.18
RFC3P40938 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
RFC3P40938 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.19■□□□□ 0.18
RFC3P40938 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC16.19■□□□□ 0.18
RFC3P40938 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 AC018470.1-201ENST00000624790 3129 ntBASIC16.19■□□□□ 0.18
RFC3P40938 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.19■□□□□ 0.18
RFC3P40938 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
RFC3P40938 AC093677.2-201ENST00000600169 1863 ntBASIC16.19■□□□□ 0.18
RFC3P40938 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC16.19■□□□□ 0.18
RFC3P40938 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 AC010460.3-201ENST00000511359 1579 ntBASIC16.19■□□□□ 0.18
RFC3P40938 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC16.19■□□□□ 0.18
RFC3P40938 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
RFC3P40938 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 RBM17P3-201ENST00000417687 1192 ntBASIC16.19■□□□□ 0.18
RFC3P40938 ABCD1P5-201ENST00000445663 754 ntBASIC16.19■□□□□ 0.18
RFC3P40938 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.19■□□□□ 0.18
RFC3P40938 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
RFC3P40938 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.19■□□□□ 0.18
RFC3P40938 SART3-203ENST00000546611 1184 ntBASIC16.19■□□□□ 0.18
RFC3P40938 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.19■□□□□ 0.18
RFC3P40938 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC16.19■□□□□ 0.18
RFC3P40938 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.19■□□□□ 0.18
RFC3P40938 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.19■□□□□ 0.18
RFC3P40938 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
RFC3P40938 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.19■□□□□ 0.18
RFC3P40938 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.19■□□□□ 0.18
RFC3P40938 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
RFC3P40938 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.19■□□□□ 0.18
RFC3P40938 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC16.19■□□□□ 0.18
RFC3P40938 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.18■□□□□ 0.18
RFC3P40938 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC16.18■□□□□ 0.18
RFC3P40938 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.18■□□□□ 0.18
RFC3P40938 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
RFC3P40938 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
RFC3P40938 AL138781.2-201ENST00000617896 1843 ntBASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms