Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1.01
BRCA1P38398 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
BRCA1P38398 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
BRCA1P38398 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
BRCA1P38398 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC21.33■■□□□ 1.01
BRCA1P38398 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1
BRCA1P38398 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
BRCA1P38398 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BRCA1P38398 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BRCA1P38398 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC21.32■■□□□ 1
BRCA1P38398 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC21.32■■□□□ 1
BRCA1P38398 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC21.32■■□□□ 1
BRCA1P38398 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC21.32■■□□□ 1
BRCA1P38398 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC21.32■■□□□ 1
BRCA1P38398 SSH2-211ENST00000590153 570 ntTSL 4 BASIC21.32■■□□□ 1
BRCA1P38398 AL359881.2-201ENST00000602973 570 ntBASIC21.32■■□□□ 1
BRCA1P38398 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC21.32■■□□□ 1
BRCA1P38398 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BRCA1P38398 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC21.32■■□□□ 1
BRCA1P38398 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC21.32■■□□□ 1
BRCA1P38398 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
BRCA1P38398 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
BRCA1P38398 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BRCA1P38398 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC21.32■■□□□ 1
BRCA1P38398 U91328.1-201ENST00000437528 223 ntBASIC21.32■■□□□ 1
BRCA1P38398 IGHV3-42-201ENST00000520410 361 ntBASIC21.32■■□□□ 1
BRCA1P38398 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC21.32■■□□□ 1
BRCA1P38398 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.32■■□□□ 1
BRCA1P38398 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC21.32■■□□□ 1
BRCA1P38398 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BRCA1P38398 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC21.32■■□□□ 1
BRCA1P38398 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC21.32■■□□□ 1
BRCA1P38398 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BRCA1P38398 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
BRCA1P38398 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC21.31■■□□□ 1
BRCA1P38398 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
BRCA1P38398 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
BRCA1P38398 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
BRCA1P38398 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC21.31■■□□□ 1
BRCA1P38398 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BRCA1P38398 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BRCA1P38398 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC21.31■■□□□ 1
BRCA1P38398 SPDYE7P-202ENST00000420373 878 ntBASIC21.31■■□□□ 1
BRCA1P38398 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
BRCA1P38398 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
BRCA1P38398 ATP5G2P4-201ENST00000442175 420 ntBASIC21.31■■□□□ 1
BRCA1P38398 FAM185BP-201ENST00000443595 716 ntBASIC21.31■■□□□ 1
BRCA1P38398 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
BRCA1P38398 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC21.31■■□□□ 1
BRCA1P38398 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC21.31■■□□□ 1
BRCA1P38398 GATD1-206ENST00000526325 756 ntTSL 5 BASIC21.31■■□□□ 1
BRCA1P38398 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC21.31■■□□□ 1
BRCA1P38398 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC21.31■■□□□ 1
BRCA1P38398 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
BRCA1P38398 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.31■■□□□ 1
BRCA1P38398 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BRCA1P38398 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC21.31■■□□□ 1
BRCA1P38398 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC21.3■■□□□ 1
BRCA1P38398 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC21.3■■□□□ 1
BRCA1P38398 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
BRCA1P38398 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 AC116407.2-201ENST00000613639 860 ntBASIC21.3■■□□□ 1
BRCA1P38398 IGHV3-72-202ENST00000621503 303 ntBASIC21.3■■□□□ 1
BRCA1P38398 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
BRCA1P38398 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC21.3■■□□□ 1
BRCA1P38398 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC21.3■■□□□ 1
BRCA1P38398 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC21.3■■□□□ 1
BRCA1P38398 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC21.3■■□□□ 1
BRCA1P38398 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC21.3■■□□□ 1
BRCA1P38398 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
BRCA1P38398 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC21.3■■□□□ 1
BRCA1P38398 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC21.3■■□□□ 1
BRCA1P38398 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.3■■□□□ 1
BRCA1P38398 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC21.3■■□□□ 1
BRCA1P38398 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.3■■□□□ 1
BRCA1P38398 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC21.3■■□□□ 1
BRCA1P38398 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC21.29■■□□□ 1
BRCA1P38398 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC21.29■■□□□ 1
BRCA1P38398 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC21.29■■□□□ 1
BRCA1P38398 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC21.29■■□□□ 1
BRCA1P38398 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC21.29■■□□□ 1
BRCA1P38398 AC009949.1-201ENST00000623048 1830 ntBASIC21.29■■□□□ 1
BRCA1P38398 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BRCA1P38398 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms