Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC20.73■□□□□ 0.91
SCN4AP35499 FLYWCH1P1-201ENST00000460917 1874 ntBASIC20.73■□□□□ 0.91
SCN4AP35499 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN4AP35499 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SCN4AP35499 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SCN4AP35499 HARS-203ENST00000431330 1774 ntTSL 2 BASIC20.73■□□□□ 0.91
SCN4AP35499 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SCN4AP35499 TFAP4-201ENST00000204517 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SCN4AP35499 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC20.72■□□□□ 0.91
SCN4AP35499 AC100803.2-201ENST00000562459 1963 ntBASIC20.72■□□□□ 0.91
SCN4AP35499 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.72■□□□□ 0.91
SCN4AP35499 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN4AP35499 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SCN4AP35499 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SCN4AP35499 PPP6R2P1-201ENST00000450880 1275 ntBASIC20.72■□□□□ 0.91
SCN4AP35499 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SCN4AP35499 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SCN4AP35499 SLC25A6P2-201ENST00000497974 877 ntBASIC20.72■□□□□ 0.91
SCN4AP35499 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC20.72■□□□□ 0.91
SCN4AP35499 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC20.72■□□□□ 0.91
SCN4AP35499 AC009118.2-201ENST00000613275 655 ntBASIC20.72■□□□□ 0.91
SCN4AP35499 AL645728.2-201ENST00000641974 660 ntBASIC20.72■□□□□ 0.91
SCN4AP35499 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC20.72■□□□□ 0.91
SCN4AP35499 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN4AP35499 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN4AP35499 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.72■□□□□ 0.91
SCN4AP35499 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN4AP35499 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.72■□□□□ 0.91
SCN4AP35499 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.72■□□□□ 0.91
SCN4AP35499 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC20.72■□□□□ 0.91
SCN4AP35499 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SCN4AP35499 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
SCN4AP35499 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN4AP35499 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN4AP35499 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SCN4AP35499 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
SCN4AP35499 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SCN4AP35499 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN4AP35499 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
SCN4AP35499 NME2P1-201ENST00000426182 414 ntBASIC20.71■□□□□ 0.91
SCN4AP35499 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC20.71■□□□□ 0.91
SCN4AP35499 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC20.71■□□□□ 0.91
SCN4AP35499 IFT20-216ENST00000588477 774 ntTSL 5 BASIC20.71■□□□□ 0.91
SCN4AP35499 AL662799.1-202ENST00000614205 422 ntBASIC20.71■□□□□ 0.91
SCN4AP35499 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
SCN4AP35499 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.71■□□□□ 0.91
SCN4AP35499 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
SCN4AP35499 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC20.71■□□□□ 0.91
SCN4AP35499 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.71■□□□□ 0.91
SCN4AP35499 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC20.71■□□□□ 0.91
SCN4AP35499 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC20.71■□□□□ 0.91
SCN4AP35499 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCN4AP35499 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN4AP35499 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN4AP35499 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN4AP35499 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCN4AP35499 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCN4AP35499 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC20.7■□□□□ 0.9
SCN4AP35499 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCN4AP35499 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
SCN4AP35499 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCN4AP35499 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC20.7■□□□□ 0.9
SCN4AP35499 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC20.7■□□□□ 0.9
SCN4AP35499 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC20.7■□□□□ 0.9
SCN4AP35499 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN4AP35499 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SCN4AP35499 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SCN4AP35499 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SCN4AP35499 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SCN4AP35499 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SCN4AP35499 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.7■□□□□ 0.9
SCN4AP35499 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN4AP35499 AC241585.1-201ENST00000433527 519 ntBASIC20.69■□□□□ 0.9
SCN4AP35499 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN4AP35499 GATD1-206ENST00000526325 756 ntTSL 5 BASIC20.69■□□□□ 0.9
SCN4AP35499 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC20.69■□□□□ 0.9
SCN4AP35499 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SCN4AP35499 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC20.69■□□□□ 0.9
SCN4AP35499 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN4AP35499 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SCN4AP35499 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC20.69■□□□□ 0.9
SCN4AP35499 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN4AP35499 PHGDH-209ENST00000641074 1780 ntBASIC20.69■□□□□ 0.9
SCN4AP35499 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
SCN4AP35499 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC20.69■□□□□ 0.9
SCN4AP35499 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN4AP35499 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC20.69■□□□□ 0.9
SCN4AP35499 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC20.69■□□□□ 0.9
SCN4AP35499 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
SCN4AP35499 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms