Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.71□□□□□ -0.21
HOXD3P31249 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
HOXD3P31249 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXD3P31249 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXD3P31249 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
HOXD3P31249 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXD3P31249 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
HOXD3P31249 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
HOXD3P31249 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXD3P31249 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXD3P31249 AC135050.7-201ENST00000624508 2218 ntBASIC13.71□□□□□ -0.22
HOXD3P31249 SLC22A11-202ENST00000377581 1975 ntTSL 5 BASIC13.71□□□□□ -0.22
HOXD3P31249 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
HOXD3P31249 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXD3P31249 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXD3P31249 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC13.7□□□□□ -0.22
HOXD3P31249 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXD3P31249 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXD3P31249 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC13.7□□□□□ -0.22
HOXD3P31249 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 RNA5SP419-201ENST00000515908 135 ntBASIC13.7□□□□□ -0.22
HOXD3P31249 AC009533.2-201ENST00000543664 586 ntBASIC13.7□□□□□ -0.22
HOXD3P31249 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC13.7□□□□□ -0.22
HOXD3P31249 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC13.7□□□□□ -0.22
HOXD3P31249 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXD3P31249 AL138831.2-201ENST00000606564 490 ntBASIC13.7□□□□□ -0.22
HOXD3P31249 AC114341.1-201ENST00000618070 349 ntBASIC13.7□□□□□ -0.22
HOXD3P31249 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC13.7□□□□□ -0.22
HOXD3P31249 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 AC125634.1-201ENST00000438758 1403 ntBASIC13.7□□□□□ -0.22
HOXD3P31249 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
HOXD3P31249 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 KRT8P47-201ENST00000604727 1398 ntBASIC13.7□□□□□ -0.22
HOXD3P31249 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
HOXD3P31249 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC13.7□□□□□ -0.22
HOXD3P31249 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 TBC1D3P5-201ENST00000579401 1545 ntBASIC13.69□□□□□ -0.22
HOXD3P31249 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
HOXD3P31249 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD3P31249 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXD3P31249 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
HOXD3P31249 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC13.69□□□□□ -0.22
HOXD3P31249 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
HOXD3P31249 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD3P31249 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC13.69□□□□□ -0.22
HOXD3P31249 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC13.69□□□□□ -0.22
HOXD3P31249 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 DANCR-204ENST00000444958 709 ntTSL 3 BASIC13.69□□□□□ -0.22
HOXD3P31249 MEG3-211ENST00000452514 461 ntTSL 3 BASIC13.69□□□□□ -0.22
HOXD3P31249 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
HOXD3P31249 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD3P31249 POLD2P1-201ENST00000511220 997 ntBASIC13.69□□□□□ -0.22
HOXD3P31249 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC13.69□□□□□ -0.22
HOXD3P31249 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD3P31249 AC092865.5-201ENST00000545435 363 ntBASIC13.69□□□□□ -0.22
HOXD3P31249 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 AC116407.2-201ENST00000613639 860 ntBASIC13.69□□□□□ -0.22
HOXD3P31249 AC139530.3-201ENST00000620344 690 ntBASIC13.69□□□□□ -0.22
HOXD3P31249 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXD3P31249 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
HOXD3P31249 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXD3P31249 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD3P31249 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC13.69□□□□□ -0.22
HOXD3P31249 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.22
HOXD3P31249 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
HOXD3P31249 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXD3P31249 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC13.69□□□□□ -0.22
HOXD3P31249 AC138028.4-201ENST00000564984 1845 ntBASIC13.69□□□□□ -0.22
HOXD3P31249 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC13.69□□□□□ -0.22
HOXD3P31249 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC13.69□□□□□ -0.22
HOXD3P31249 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms