Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 KRT17P6-201ENST00000453795 1220 ntBASIC17.65■□□□□ 0.42
MSH3P20585 MINOS1P3-201ENST00000457048 203 ntBASIC17.65■□□□□ 0.42
MSH3P20585 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
MSH3P20585 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC17.65■□□□□ 0.42
MSH3P20585 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 AC074051.2-201ENST00000565115 352 ntBASIC17.65■□□□□ 0.42
MSH3P20585 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
MSH3P20585 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC17.65■□□□□ 0.42
MSH3P20585 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
MSH3P20585 TBC1D3P5-201ENST00000579401 1545 ntBASIC17.65■□□□□ 0.42
MSH3P20585 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.65■□□□□ 0.42
MSH3P20585 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
MSH3P20585 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
MSH3P20585 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC17.65■□□□□ 0.42
MSH3P20585 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
MSH3P20585 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
MSH3P20585 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
MSH3P20585 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH3P20585 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC17.64■□□□□ 0.41
MSH3P20585 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
MSH3P20585 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH3P20585 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSH3P20585 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.64■□□□□ 0.41
MSH3P20585 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.64■□□□□ 0.41
MSH3P20585 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH3P20585 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSH3P20585 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH3P20585 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSH3P20585 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSH3P20585 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
MSH3P20585 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC17.64■□□□□ 0.41
MSH3P20585 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH3P20585 AC091607.1-201ENST00000490318 1060 ntBASIC17.64■□□□□ 0.41
MSH3P20585 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
MSH3P20585 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC17.64■□□□□ 0.41
MSH3P20585 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.64■□□□□ 0.41
MSH3P20585 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.64■□□□□ 0.41
MSH3P20585 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
MSH3P20585 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17.64■□□□□ 0.41
MSH3P20585 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
MSH3P20585 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.64■□□□□ 0.41
MSH3P20585 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
MSH3P20585 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.64■□□□□ 0.41
MSH3P20585 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
MSH3P20585 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC17.64■□□□□ 0.41
MSH3P20585 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.64■□□□□ 0.41
MSH3P20585 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.63■□□□□ 0.41
MSH3P20585 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
MSH3P20585 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
MSH3P20585 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC17.63■□□□□ 0.41
MSH3P20585 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.63■□□□□ 0.41
MSH3P20585 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.63■□□□□ 0.41
MSH3P20585 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
MSH3P20585 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC17.63■□□□□ 0.41
MSH3P20585 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC17.63■□□□□ 0.41
MSH3P20585 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
MSH3P20585 AC012615.1-201ENST00000565797 1299 ntBASIC17.63■□□□□ 0.41
MSH3P20585 AP005901.3-202ENST00000581653 237 ntBASIC17.63■□□□□ 0.41
MSH3P20585 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.63■□□□□ 0.41
MSH3P20585 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
MSH3P20585 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
MSH3P20585 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
MSH3P20585 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.63■□□□□ 0.41
MSH3P20585 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH3P20585 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH3P20585 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH3P20585 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC17.62■□□□□ 0.41
MSH3P20585 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.62■□□□□ 0.41
MSH3P20585 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH3P20585 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
MSH3P20585 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
MSH3P20585 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
MSH3P20585 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC17.62■□□□□ 0.41
MSH3P20585 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
MSH3P20585 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
MSH3P20585 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.62■□□□□ 0.41
MSH3P20585 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.62■□□□□ 0.41
MSH3P20585 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.62■□□□□ 0.41
MSH3P20585 MIR3652-201ENST00000579335 131 ntBASIC17.62■□□□□ 0.41
MSH3P20585 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms