Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SEMA3DO95025 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SEMA3DO95025 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SEMA3DO95025 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SEMA3DO95025 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.98■□□□□ 0.31
SEMA3DO95025 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.98■□□□□ 0.31
SEMA3DO95025 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
SEMA3DO95025 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC16.98■□□□□ 0.31
SEMA3DO95025 AC096633.1-201ENST00000422446 749 ntBASIC16.98■□□□□ 0.31
SEMA3DO95025 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.98■□□□□ 0.31
SEMA3DO95025 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC16.98■□□□□ 0.31
SEMA3DO95025 GUSBP12-201ENST00000513727 720 ntBASIC16.98■□□□□ 0.31
SEMA3DO95025 AC011498.5-201ENST00000592027 486 ntBASIC16.98■□□□□ 0.31
SEMA3DO95025 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.98■□□□□ 0.31
SEMA3DO95025 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
SEMA3DO95025 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
SEMA3DO95025 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SEMA3DO95025 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
SEMA3DO95025 LINC00304-203ENST00000565008 1864 ntBASIC16.98■□□□□ 0.31
SEMA3DO95025 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SEMA3DO95025 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SEMA3DO95025 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.98■□□□□ 0.31
SEMA3DO95025 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SEMA3DO95025 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SEMA3DO95025 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SEMA3DO95025 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.98■□□□□ 0.31
SEMA3DO95025 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SEMA3DO95025 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.98■□□□□ 0.31
SEMA3DO95025 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.97■□□□□ 0.31
SEMA3DO95025 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 AC011270.2-201ENST00000624293 2550 ntBASIC16.97■□□□□ 0.31
SEMA3DO95025 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
SEMA3DO95025 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC16.97■□□□□ 0.31
SEMA3DO95025 BX276092.7-203ENST00000637198 1536 ntBASIC16.97■□□□□ 0.31
SEMA3DO95025 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SEMA3DO95025 AL355312.1-201ENST00000407115 2176 ntBASIC16.97■□□□□ 0.31
SEMA3DO95025 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 TSPY22P-201ENST00000427496 604 ntBASIC16.97■□□□□ 0.31
SEMA3DO95025 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC16.97■□□□□ 0.31
SEMA3DO95025 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 VPS72-207ENST00000640458 689 ntTSL 5 BASIC16.97■□□□□ 0.31
SEMA3DO95025 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC16.97■□□□□ 0.31
SEMA3DO95025 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.97■□□□□ 0.31
SEMA3DO95025 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SEMA3DO95025 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
SEMA3DO95025 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
SEMA3DO95025 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.97■□□□□ 0.31
SEMA3DO95025 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
SEMA3DO95025 HLA-J-201ENST00000462773 1622 ntBASIC16.96■□□□□ 0.31
SEMA3DO95025 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SEMA3DO95025 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.96■□□□□ 0.31
SEMA3DO95025 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC16.96■□□□□ 0.31
SEMA3DO95025 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.96■□□□□ 0.31
SEMA3DO95025 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.31
SEMA3DO95025 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC16.96■□□□□ 0.31
SEMA3DO95025 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 RN7SL606P-201ENST00000472779 293 ntBASIC16.96■□□□□ 0.31
SEMA3DO95025 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SEMA3DO95025 KRT8P26-201ENST00000534154 1276 ntBASIC16.96■□□□□ 0.31
SEMA3DO95025 AC090616.6-201ENST00000582640 721 ntBASIC16.96■□□□□ 0.31
SEMA3DO95025 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.96■□□□□ 0.31
SEMA3DO95025 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 AL353801.3-201ENST00000609898 542 ntBASIC16.96■□□□□ 0.31
SEMA3DO95025 AL590326.2-201ENST00000625139 305 ntBASIC16.96■□□□□ 0.31
SEMA3DO95025 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC16.96■□□□□ 0.31
SEMA3DO95025 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SEMA3DO95025 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.96■□□□□ 0.3
SEMA3DO95025 FST-202ENST00000396947 2538 ntTSL 5 BASIC16.96■□□□□ 0.3
SEMA3DO95025 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SEMA3DO95025 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
SEMA3DO95025 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SEMA3DO95025 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
SEMA3DO95025 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
SEMA3DO95025 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
SEMA3DO95025 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
SEMA3DO95025 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
SEMA3DO95025 AC097374.2-201ENST00000618617 1306 ntBASIC16.96■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms