Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
RNF40O75150 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.13■□□□□ 0.65
RNF40O75150 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.13■□□□□ 0.65
RNF40O75150 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC19.13■□□□□ 0.65
RNF40O75150 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
RNF40O75150 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.13■□□□□ 0.65
RNF40O75150 MIR3180-1-201ENST00000580374 94 ntBASIC19.13■□□□□ 0.65
RNF40O75150 RN7SL510P-201ENST00000581311 263 ntBASIC19.13■□□□□ 0.65
RNF40O75150 MIR3180-3-201ENST00000584616 94 ntBASIC19.13■□□□□ 0.65
RNF40O75150 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.13■□□□□ 0.65
RNF40O75150 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.13■□□□□ 0.65
RNF40O75150 GAS2L1P1-201ENST00000420145 1480 ntBASIC19.13■□□□□ 0.65
RNF40O75150 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 NARF-204ENST00000390006 1766 ntTSL 2 BASIC19.13■□□□□ 0.65
RNF40O75150 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC19.13■□□□□ 0.65
RNF40O75150 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC19.13■□□□□ 0.65
RNF40O75150 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
RNF40O75150 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
RNF40O75150 PKD1P1-201ENST00000458669 6805 ntBASIC19.12■□□□□ 0.65
RNF40O75150 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC19.12■□□□□ 0.65
RNF40O75150 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
RNF40O75150 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF40O75150 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF40O75150 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.12■□□□□ 0.65
RNF40O75150 AC011270.2-201ENST00000624293 2550 ntBASIC19.12■□□□□ 0.65
RNF40O75150 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF40O75150 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC19.12■□□□□ 0.65
RNF40O75150 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF40O75150 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.12■□□□□ 0.65
RNF40O75150 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
RNF40O75150 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF40O75150 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 PPIH-202ENST00000372549 327 ntTSL 3 BASIC19.12■□□□□ 0.65
RNF40O75150 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 AC246785.2-201ENST00000432512 513 ntBASIC19.12■□□□□ 0.65
RNF40O75150 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF40O75150 SEC1P-202ENST00000473944 940 ntBASIC19.12■□□□□ 0.65
RNF40O75150 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.12■□□□□ 0.65
RNF40O75150 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC19.12■□□□□ 0.65
RNF40O75150 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.12■□□□□ 0.65
RNF40O75150 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.12■□□□□ 0.65
RNF40O75150 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
RNF40O75150 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
RNF40O75150 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
RNF40O75150 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF40O75150 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF40O75150 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
RNF40O75150 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 AP002383.4-201ENST00000442518 975 ntBASIC19.11■□□□□ 0.65
RNF40O75150 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC19.11■□□□□ 0.65
RNF40O75150 AP002414.4-201ENST00000589764 1148 ntBASIC19.11■□□□□ 0.65
RNF40O75150 KLK8-205ENST00000593490 267 ntTSL 3 BASIC19.11■□□□□ 0.65
RNF40O75150 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF40O75150 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 AC079602.3-201ENST00000623931 403 ntBASIC19.11■□□□□ 0.65
RNF40O75150 AL157888.1-201ENST00000631930 593 ntBASIC19.11■□□□□ 0.65
RNF40O75150 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF40O75150 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC19.11■□□□□ 0.65
RNF40O75150 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
RNF40O75150 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
RNF40O75150 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC19.11■□□□□ 0.65
RNF40O75150 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms