Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
TRIM13O60858 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
TRIM13O60858 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM13O60858 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
TRIM13O60858 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM13O60858 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
TRIM13O60858 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM13O60858 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM13O60858 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
TRIM13O60858 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM13O60858 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 SNX21-213ENST00000614929 587 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM13O60858 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC17.44■□□□□ 0.38
TRIM13O60858 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.44■□□□□ 0.38
TRIM13O60858 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 KRT17P2-201ENST00000300992 1314 ntBASIC17.44■□□□□ 0.38
TRIM13O60858 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
TRIM13O60858 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 CYP2D8P-201ENST00000433633 1490 ntBASIC17.44■□□□□ 0.38
TRIM13O60858 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.44■□□□□ 0.38
TRIM13O60858 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
TRIM13O60858 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
TRIM13O60858 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM13O60858 AL118508.1-201ENST00000613502 2345 ntBASIC17.43■□□□□ 0.38
TRIM13O60858 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM13O60858 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM13O60858 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM13O60858 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM13O60858 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
TRIM13O60858 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM13O60858 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM13O60858 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM13O60858 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
TRIM13O60858 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM13O60858 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM13O60858 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.43■□□□□ 0.38
TRIM13O60858 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC17.43■□□□□ 0.38
TRIM13O60858 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM13O60858 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM13O60858 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.43■□□□□ 0.38
TRIM13O60858 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM13O60858 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM13O60858 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM13O60858 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM13O60858 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
TRIM13O60858 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.43■□□□□ 0.38
TRIM13O60858 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC17.43■□□□□ 0.38
TRIM13O60858 KRT89P-201ENST00000620027 1478 ntBASIC17.43■□□□□ 0.38
TRIM13O60858 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
TRIM13O60858 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
TRIM13O60858 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRIM13O60858 KIZ-211ENST00000619574 1971 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
TRIM13O60858 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TRIM13O60858 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
TRIM13O60858 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.42■□□□□ 0.38
TRIM13O60858 AP000523.1-201ENST00000398242 1049 ntBASIC17.42■□□□□ 0.38
TRIM13O60858 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 HMGA1P5-201ENST00000412453 271 ntBASIC17.42■□□□□ 0.38
TRIM13O60858 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM13O60858 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC17.42■□□□□ 0.38
TRIM13O60858 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM13O60858 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM13O60858 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.42■□□□□ 0.38
TRIM13O60858 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM13O60858 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC17.42■□□□□ 0.38
TRIM13O60858 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
TRIM13O60858 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRIM13O60858 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
TRIM13O60858 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms